7A5P | pdb_00007a5p

Human C Complex Spliceosome - Medium-resolution PERIPHERY

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth A]SCOP2B SuperfamilyJAB1/MPN domain-like 8053277 3001105 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyRibonuclease H-like 8041105 3000143 SCOP2B (2022-06-29)
VA [auth z]SCOP2B SuperfamilyCyclophilin-like 8036491 3000168 SCOP2B (2022-06-29)
UA [auth y]SCOP2B SuperfamilyRecA-like P-loop NTPases 8042951 3002019 SCOP2B (2022-06-29)
UA [auth y]SCOP2B SuperfamilyRecA-like P-loop NTPases 8042950 3002019 SCOP2B (2022-06-29)
SA [auth w]SCOP2B SuperfamilyRNA-binding domain, RBD 8042953 3000110 SCOP2B (2022-06-29)
RA [auth v]SCOP2B SuperfamilyMago nashi protein 8042952 3000634 SCOP2B (2022-06-29)
NA [auth q]SCOP2B SuperfamilyBrl domain-like 8036193 3000115 SCOP2B (2022-06-29)
NA [auth q]SCOP2B SuperfamilyE set domains 8055093 3000070 SCOP2B (2022-06-29)
LA [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8039202 3000110 SCOP2B (2022-06-29)
HA [auth k]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
DA [auth g]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
FA [auth i]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
CA [auth f]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
GA [auth j]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
BA [auth e]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
EA [auth h]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
AA [auth d]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
Z [auth c]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
KA [auth n]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
Y [auth b]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
JA [auth m]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
X [auth a]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
IA [auth l]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
V [auth X]SCOP2B SuperfamilyRNA-binding domain, RBD 8035327 3000110 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyL domain-like 8043993 3001010 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyARM repeat-like 8090869 3000116 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyUpf1 beta-barrel domain-like 8090870 3002168 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyRecA-like P-loop NTPases 8090871 3002019 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyRecA-like P-loop NTPases 8090872 3002019 SCOP2B (2022-06-29)
Q [auth P]SCOP2B SuperfamilyRNA-binding domain, RBD 8064957 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth E]Ldh_1_Ce7a5pE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
E [auth A]Ldh_1_Ce7a5pA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
VA [auth z]Ldh_1_Ce7a5pz1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
UA [auth y]Ldh_1_Ce7a5py1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
TA [auth x]Ldh_1_Ce7a5px1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
SA [auth w]Ldh_1_Ce7a5pw1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
RA [auth v]Ldh_1_Ce7a5pv1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
PA [auth s]Ldh_1_Ce7a5ps1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
OA [auth r]Ldh_1_Ce7a5pr1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
NA [auth q]Ldh_1_Ce7a5pq1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
LA [auth o]Ldh_1_Ce7a5po1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
HA [auth k]Ldh_1_Ce7a5pk1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
DA [auth g]Ldh_1_Ce7a5pg1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
FA [auth i]Ldh_1_Ce7a5pi1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
CA [auth f]Ldh_1_Ce7a5pf1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
GA [auth j]Ldh_1_Ce7a5pj1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
BA [auth e]Ldh_1_Ce7a5pe1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
EA [auth h]Ldh_1_Ce7a5ph1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
AA [auth d]Ldh_1_Ce7a5pd1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
Z [auth c]Ldh_1_Ce7a5pc1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
KA [auth n]Ldh_1_Ce7a5pn1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
Y [auth b]Ldh_1_Ce7a5pb1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
JA [auth m]Ldh_1_Ce7a5pm1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
X [auth a]Ldh_1_Ce7a5pa1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
IA [auth l]Ldh_1_Ce7a5pl1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
V [auth X]Ldh_1_Ce7a5pX1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
U [auth W]Ldh_1_Ce7a5pW1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
T [auth U]Ldh_1_Ce7a5pU1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
S [auth T]Ldh_1_Ce7a5pT1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
Q [auth P]Ldh_1_Ce7a5pP1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)
P [auth O]PA14e7a5pO1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: PA14ECOD (v294.1)
N [auth M]Ldh_1_Ce7a5pM1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
L [auth K]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		PF08606Prp19/Pso4-like (Prp19)Prp19/Pso4-likeThis regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif [1]. PRP19-like proteins form an oligomer that is necessary for spliceosome ...This regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif [1]. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [1].
Domain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
G [auth E]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
G [auth E]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
F [auth C]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
E [auth A]PF12134PRP8 domain IV core (PRP8_domainIV)PRP8 domain IV coreThis domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ...This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. This domain adopts a RNase H like fold within its core structure but with little sequence similarity. The function of PRP8 domain IV is believed to be interaction with the splicosomal core [1].
Domain
E [auth A]PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1]. Domain
E [auth A]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
E [auth A]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
W [auth Y]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
W [auth Y]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
V [auth X]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
V [auth X]PF06229FRG1-like domain (FRG1)FRG1-like domainThe human FRG1 gene maps to human chromosome 4q35 and has been identified as a candidate for facioscapulohumeral muscular dystrophy. Currently, the function of FRG1 is unknown [1]. Domain
U [auth W]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
T [auth U]PF21144Intron-binding protein aquarius insert domain (Aquarius_N_3rd)Intron-binding protein aquarius insert domainThis entry represents the insert domain of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2]. Domain
T [auth U]PF13086AAA domain (AAA_11)AAA domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Domain
T [auth U]PF21143Intron-binding protein aquarius, beta-barrel (Aquarius_N_2nd)Intron-binding protein aquarius, beta-barrelThis entry represents the beta-barrel domain found at the N-terminal of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2]. Domain
T [auth U]PF13087AAA domain (AAA_12)AAA domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Domain
T [auth U]PF16399Intron-binding protein aquarius N-terminal (Aquarius_N_1st)Intron-binding protein aquarius N-terminal- Repeat
S [auth T]PF02854MIF4G domain (MIF4G)MIF4G domain- Repeat
R [auth S]PF08312cwf21 domain (cwf21)cwf21 domainThe cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe [1]. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 dom ...The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe [1]. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding [2]. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Domain
Q [auth P]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
P [auth O]PF23231Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat (HAT_Syf1_CNRKL1_C)Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat- Repeat
P [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
O [auth N]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
N [auth M]PF23233Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat (HAT_Syf1_CNRKL1_N)Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat- Repeat
N [auth M]PF23231Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat (HAT_Syf1_CNRKL1_C)Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat- Repeat
N [auth M]PF23220Pre-mRNA-splicing factor SYF1 middle HAT repeat (HAT_Syf1_M)Pre-mRNA-splicing factor SYF1 middle HAT repeat- Repeat
N [auth M]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
M [auth L]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth K]Pre-mRNA-splicing factor SPF27-
H [auth G],
I [auth H],
J [auth I],
K [auth J]		Pre-mRNA-processing factor 19
G [auth E]Pre-mRNA-processing factor 17
F [auth C]SNW domain-containing protein 1
E [auth A]Pre-mRNA-processing-splicing factor 8
D [auth 8]UNKNOWN---
VA [auth z]Peptidylprolyl isomerase domain and WD repeat-containing protein 1
UA [auth y]Eukaryotic initiation factor 4A-III
TA [auth x]Protein FRG1
SA [auth w]RNA-binding protein 8A
RA [auth v]Protein mago nashi homolog
QA [auth u]Splicing factor YJU2
PA [auth s]Pre-mRNA-splicing factor ISY1 homolog
OA [auth r]Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
NA [auth q]U5 small nuclear ribonucleoprotein 200 kDa helicase
C [auth 6]U6 snRNA---
MA [auth p]WD repeat-containing protein 70 -
LA [auth o]Peptidyl-prolyl cis-trans isomerase E
DA [auth g],
HA [auth k]		Small nuclear ribonucleoprotein G
CA [auth f],
FA [auth i]		Small nuclear ribonucleoprotein F
BA [auth e],
GA [auth j]		Small nuclear ribonucleoprotein E
AA [auth d],
EA [auth h]		Small nuclear ribonucleoprotein Sm D2
KA [auth n],
Z [auth c]		Small nuclear ribonucleoprotein Sm D1
JA [auth m],
Y [auth b]		Small nuclear ribonucleoprotein-associated proteins B and B'
IA [auth l],
X [auth a]		Small nuclear ribonucleoprotein Sm D3
W [auth Y]pre-mRNA---
B [auth 5]U5 snRNA---
V [auth X]U2 small nuclear ribonucleoprotein B''
U [auth W]U2 small nuclear ribonucleoprotein A'
T [auth U]Intron-binding protein aquarius
S [auth T]Pre-mRNA-splicing factor CWC22 homolog
R [auth S]Serine/arginine repetitive matrix protein 2
Q [auth P]Pre-mRNA-splicing factor RBM22
P [auth O]Crooked neck-like protein 1
O [auth N]Pre-mRNA-splicing factor SYF2
N [auth M]Pre-mRNA-splicing factor SYF1-
M [auth L]Cell division cycle 5-like protein
A [auth 2]U2 snRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth K]IPR008409Pre-mRNA-splicing factor SPF27Family
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR038959Prp19Family
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR019775WD40 repeat, conserved siteConserved Site
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR013915Prp19, coiled-coil regionDomain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR003613U-box domainDomain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR001680WD40 repeatRepeat
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR055340Pre-mRNA-processing factor 19, U-box domainDomain
G [auth E]IPR019775WD40 repeat, conserved siteConserved Site
G [auth E]IPR032847Pre-mRNA-processing factor 17Family
G [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth E]IPR001680WD40 repeatRepeat
G [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth C]IPR017862SKI-interacting protein, SKIPFamily
F [auth C]IPR004015SKI-interacting protein SKIP, SNW domainDomain
E [auth A]IPR012984PROCT domainDomain
E [auth A]IPR012591PRO8NT domainDomain
E [auth A]IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
E [auth A]IPR027652Pre-mRNA-processing-splicing factor 8Family
E [auth A]IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
E [auth A]IPR012592PROCN domainDomain
E [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
E [auth A]IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
E [auth A]IPR021983PRP8 domain IV coreDomain
E [auth A]IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
E [auth A]IPR037518MPN domainDomain
E [auth A]IPR019582RNA recognition motif, spliceosomal PrP8Domain
E [auth A]IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
E [auth A]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
VA [auth z]IPR001680WD40 repeatRepeat
VA [auth z]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
VA [auth z]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
VA [auth z]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
VA [auth z]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
VA [auth z]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
UA [auth y]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
UA [auth y]IPR014014RNA helicase, DEAD-box type, Q motifDomain
UA [auth y]IPR011545DEAD/DEAH-box helicase domainDomain
UA [auth y]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
UA [auth y]IPR001650Helicase, C-terminal domain-likeDomain
UA [auth y]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
TA [auth x]IPR008999Actin-crosslinkingHomologous Superfamily
TA [auth x]IPR010414Protein FRG1Family
SA [auth w]IPR033744RBM8, RNA recognition motifDomain
SA [auth w]IPR000504RNA recognition motif domainDomain
SA [auth w]IPR008111RNA-binding motif protein 8Family
SA [auth w]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth w]IPR035979RNA-binding domain superfamilyHomologous Superfamily
RA [auth v]IPR004023Mago nashi proteinFamily
RA [auth v]IPR036605Mago nashi superfamilyHomologous Superfamily
QA [auth u]IPR043701Splicing factor Yju2Family
QA [auth u]IPR007590Saf4/Yju2 proteinFamily
PA [auth s]IPR029012Helix hairpin bin domain superfamilyHomologous Superfamily
PA [auth s]IPR009360Pre-mRNA-splicing factor Isy1Family
PA [auth s]IPR037200Pre-mRNA-splicing factor Isy1 superfamilyHomologous Superfamily
OA [auth r]IPR011709DEAD-box helicase, OB foldDomain
OA [auth r]IPR001650Helicase, C-terminal domain-likeDomain
OA [auth r]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
OA [auth r]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
OA [auth r]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
OA [auth r]IPR007502Helicase-associated domainDomain
OA [auth r]IPR011545DEAD/DEAH-box helicase domainDomain
OA [auth r]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth q]IPR048863Pre-mRNA-splicing helicase BRR2-like, plug domainDomain
NA [auth q]IPR041094Brr2, N-terminal helicase PWI domainDomain
NA [auth q]IPR004179Sec63 domainDomain
NA [auth q]IPR014756Immunoglobulin E-setHomologous Superfamily
NA [auth q]IPR011545DEAD/DEAH-box helicase domainDomain
NA [auth q]IPR057842MER3 helicase-like, winged helix domainDomain
NA [auth q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth q]IPR050474Helicase Hel308/SKI2-likeFamily
NA [auth q]IPR001650Helicase, C-terminal domain-likeDomain
NA [auth q]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
NA [auth q]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
NA [auth q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
NA [auth q]IPR035892C2 domain superfamilyHomologous Superfamily
MA [auth p]IPR001680WD40 repeatRepeat
MA [auth p]IPR051858WD repeat-containing GAD-1Family
MA [auth p]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MA [auth p]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
LA [auth o]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
LA [auth o]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
LA [auth o]IPR034168Peptidyl-prolyl cis-trans isomerase E, RNA recognition motifDomain
LA [auth o]IPR016304Peptidyl-prolyl cis-trans isomerase EFamily
LA [auth o]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
LA [auth o]IPR000504RNA recognition motif domainDomain
LA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
DA [auth g],
HA [auth k]		IPR044641Sm-like protein Lsm7/SmGFamily
DA [auth g],
HA [auth k]		IPR034098Small nuclear ribonucleoprotein GFamily
DA [auth g],
HA [auth k]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
DA [auth g],
HA [auth k]		IPR047575Sm domainDomain
DA [auth g],
HA [auth k]		IPR010920LSM domain superfamilyHomologous Superfamily
CA [auth f],
FA [auth i]		IPR016487Sm-like protein Lsm6/SmFFamily
CA [auth f],
FA [auth i]		IPR034100Small nuclear ribonucleoprotein FFamily
CA [auth f],
FA [auth i]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
CA [auth f],
FA [auth i]		IPR047575Sm domainDomain
CA [auth f],
FA [auth i]		IPR010920LSM domain superfamilyHomologous Superfamily
BA [auth e],
GA [auth j]		IPR027078Small nuclear ribonucleoprotein EFamily
BA [auth e],
GA [auth j]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
BA [auth e],
GA [auth j]		IPR047575Sm domainDomain
BA [auth e],
GA [auth j]		IPR010920LSM domain superfamilyHomologous Superfamily
AA [auth d],
EA [auth h]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
AA [auth d],
EA [auth h]		IPR047575Sm domainDomain
AA [auth d],
EA [auth h]		IPR027248Small nuclear ribonucleoprotein Sm D2Family
AA [auth d],
EA [auth h]		IPR010920LSM domain superfamilyHomologous Superfamily
KA [auth n],
Z [auth c]		IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
KA [auth n],
Z [auth c]		IPR034102Small nuclear ribonucleoprotein D1Domain
KA [auth n],
Z [auth c]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
KA [auth n],
Z [auth c]		IPR047575Sm domainDomain
KA [auth n],
Z [auth c]		IPR010920LSM domain superfamilyHomologous Superfamily
JA [auth m],
Y [auth b]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
JA [auth m],
Y [auth b]		IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
JA [auth m],
Y [auth b]		IPR047575Sm domainDomain
JA [auth m],
Y [auth b]		IPR010920LSM domain superfamilyHomologous Superfamily
IA [auth l],
X [auth a]		IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
IA [auth l],
X [auth a]		IPR034099Small nuclear ribonucleoprotein Sm D3Family
IA [auth l],
X [auth a]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
IA [auth l],
X [auth a]		IPR047575Sm domainDomain
IA [auth l],
X [auth a]		IPR010920LSM domain superfamilyHomologous Superfamily
V [auth X]IPR034562U2 small nuclear ribonucleoprotein B'', RNA recognition motif 2Domain
V [auth X]IPR000504RNA recognition motif domainDomain
V [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth X]IPR035979RNA-binding domain superfamilyHomologous Superfamily
V [auth X]IPR034564U2 small nuclear ribonucleoprotein B'', RNA recognition motif 1Domain
U [auth W]IPR001611Leucine-rich repeatRepeat
U [auth W]IPR003603U2A'/phosphoprotein 32 family A, C-terminalDomain
U [auth W]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
U [auth W]IPR044640U2 small nuclear ribonucleoprotein A'Family
T [auth U]IPR048966RNA helicase aquarius, beta-barrelDomain
T [auth U]IPR048967RNA helicase aquarius, insertion domainDomain
T [auth U]IPR041677DNA2/NAM7 helicase, helicase domainDomain
T [auth U]IPR026300CWF11 familyFamily
T [auth U]IPR045055DNA2/NAM7-like helicaseFamily
T [auth U]IPR032174RNA helicase aquarius, N-terminal domainDomain
T [auth U]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
T [auth U]IPR047187Upf1-like, C-terminal helicase domainDomain
T [auth U]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
S [auth T]IPR050781Pre-mRNA-splicing factor CWC22Family
S [auth T]IPR016024Armadillo-type foldHomologous Superfamily
S [auth T]IPR003891Initiation factor eIF-4 gamma, MA3Domain
S [auth T]IPR003890MIF4G-like, type 3Domain
R [auth S]IPR047490Serine/arginine repetitive matrix protein 2, cwf21 domainDomain
R [auth S]IPR013170mRNA splicing factor Cwf21 domainDomain
R [auth S]IPR024945Spt5 C-terminal domainDomain
R [auth S]IPR051372Pre-mRNA-splicing factor CWC21Family
Q [auth P]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
Q [auth P]IPR039171Pre-mRNA-splicing factor Cwc2/Slt11Family
Q [auth P]IPR057674RBM22, CCCH zinc finger domainDomain
Q [auth P]IPR000504RNA recognition motif domainDomain
Q [auth P]IPR000571Zinc finger, CCCH-typeDomain
Q [auth P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth P]IPR048995STL11/RBM22-like, N-terminal domainDomain
Q [auth P]IPR035979RNA-binding domain superfamilyHomologous Superfamily
P [auth O]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
P [auth O]IPR055430Pre-mRNA-splicing factor Syf1/CRNKL1-like, C-terminal HAT-repeats domainDomain
P [auth O]IPR003107HAT (Half-A-TPR) repeatRepeat
P [auth O]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
O [auth N]IPR013260mRNA splicing factor SYF2Family
N [auth M]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
N [auth M]IPR055430Pre-mRNA-splicing factor Syf1/CRNKL1-like, C-terminal HAT-repeats domainDomain
N [auth M]IPR003107HAT (Half-A-TPR) repeatRepeat
N [auth M]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
N [auth M]IPR056350Pre-mRNA-splicing factor SYF1, central HAT repeats domainDomain
N [auth M]IPR019734Tetratricopeptide repeatRepeat
N [auth M]IPR055433Pre-mRNA-splicing factor Syf1-like, N-terminal HAT-repeats domainDomain
M [auth L]IPR047240Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainDomain
M [auth L]IPR017930Myb domainDomain
M [auth L]IPR047242Pre-mRNA splicing factor component CDC5L/Cef1Family
M [auth L]IPR009057Homedomain-like superfamilyHomologous Superfamily
M [auth L]IPR001005SANT/Myb domainDomain
M [auth L]IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
L [auth K]Pharos:  O75934
H [auth G],
I [auth H],
J [auth I],
K [auth J]		Pharos:  Q9UMS4
G [auth E]Pharos:  O60508
F [auth C]Pharos:  Q13573
E [auth A]Pharos:  Q6P2Q9
VA [auth z]Pharos:  Q96BP3
UA [auth y]Pharos:  P38919
TA [auth x]Pharos:  Q14331
SA [auth w]Pharos:  Q9Y5S9
RA [auth v]Pharos:  P61326
QA [auth u]Pharos:  Q9BW85
OA [auth r]Pharos:  Q92620
NA [auth q]Pharos:  O75643
MA [auth p]Pharos:  Q9NW82
LA [auth o]Pharos:  Q9UNP9
DA [auth g],
HA [auth k]		Pharos:  P62308
CA [auth f],
FA [auth i]		Pharos:  P62306
BA [auth e],
GA [auth j]		Pharos:  P62304
AA [auth d],
EA [auth h]		Pharos:  P62316
KA [auth n],
Z [auth c]		Pharos:  P62314
JA [auth m],
Y [auth b]		Pharos:  P14678
IA [auth l],
X [auth a]		Pharos:  P62318
V [auth X]Pharos:  P08579
T [auth U]Pharos:  O60306
S [auth T]Pharos:  Q9HCG8
R [auth S]Pharos:  Q9UQ35
Q [auth P]Pharos:  Q9NW64
P [auth O]Pharos:  Q9BZJ0
O [auth N]Pharos:  O95926
N [auth M]Pharos:  Q9HCS7
M [auth L]Pharos:  Q99459