6ZYW

Outer Dynein Arm-Shulin complex - overall structure (Tetrahymena thermophila)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2 FamilyRoadblock/LC7 domain-like8102438 4001551 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyRoadblock/LC7 domain-like8102439 3001810 SCOP2 (2022-06-29)
MSCOP2B SuperfamilyDLC-like8102441 3000821 SCOP2B (2022-06-29)
JSCOP2 FamilyDLC8102442 4001121 SCOP2 (2022-06-29)
JSCOP2 SuperfamilyDLC-like8102443 3000821 SCOP2 (2022-06-29)
HSCOP2 FamilyDLC8102330 4001121 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyDLC-like8102331 3000821 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EF_UNCLASSIFIEDe6zywE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
GPF03259e6zywG1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF03259ECOD (1.6)
MPF01221e6zywM1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF01221ECOD (1.6)
NPF03645e6zywN1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF03645ECOD (1.6)
JPF01221e6zywJ1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF01221ECOD (1.6)
KPF01221e6zywK1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF01221ECOD (1.6)
LPF01221e6zywL1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF01221ECOD (1.6)
OPF03645e6zywO1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF03645ECOD (1.6)
PPF00085e6zywP1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF00085ECOD (1.6)
DPF00400e6zywD1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
FPF03259e6zywF1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF03259ECOD (1.6)
HPF01221e6zywH1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF01221ECOD (1.6)
IPF01221e6zywI1 A: a+b two layersX: DLC (From Topology)H: DLC (From Topology)T: DLCF: PF01221ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1- Domain
PF03645Tctex-1 family (Tctex-1)Tctex-1 family- Family
PF12775P-loop containing dynein motor region (AAA_7)P-loop containing dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydr ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs) [1].
Domain
PF18198Dynein heavy chain AAA lid domain (AAA_lid_11)Dynein heavy chain AAA lid domainThis family represents the AAA lid domain found neat the C-terminal region of dynein heavy chain.Domain
PF12774Hydrolytic ATP binding site of dynein motor region (AAA_6)Hydrolytic ATP binding site of dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6) [1]. This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis [2]. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site [1].
Domain
PF12781ATP-binding dynein motor region (AAA_9)ATP-binding dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk [1].
Domain
PF18199Dynein heavy chain C-terminal domain (Dynein_C)Dynein heavy chain C-terminal domainThis family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading ove ...This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain [3].
Domain
PF12780P-loop containing dynein motor region D4 (AAA_8)P-loop containing dynein motor region D4The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor [1].
Domain
PF17852Dynein heavy chain AAA lid domain (Dynein_AAA_lid)Dynein heavy chain AAA lid domainThis entry corresponds to the extension domain of AAA domain 5 in the dynein heavy chain [1]. This domain is composed of 8 alpha helices [1].Domain
PF08393Dynein heavy chain, N-terminal region 2 (DHC_N2)Dynein heavy chain, N-terminal region 2- Family
PF17857AAA+ lid domain (AAA_lid_1)AAA+ lid domainThis domain represents the AAA lid domain from dynein heavy chain D3.Domain
PF03028Dynein heavy chain region D6 P-loop domain (Dynein_heavy)Dynein heavy chain region D6 P-loop domainThis family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved i ...This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains [1]. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained [2].
Domain
PF12777Microtubule-binding stalk of dynein motor (MT)Microtubule-binding stalk of dynein motorthe 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [1].
Domain
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1- Domain
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1- Domain
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1- Domain
PF03645Tctex-1 family (Tctex-1)Tctex-1 family- Family
PF00085Thioredoxin (Thioredoxin)ThioredoxinThioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.Domain
PF12775P-loop containing dynein motor region (AAA_7)P-loop containing dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydr ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs) [1].
Domain
PF18198Dynein heavy chain AAA lid domain (AAA_lid_11)Dynein heavy chain AAA lid domainThis family represents the AAA lid domain found neat the C-terminal region of dynein heavy chain.Domain
PF12774Hydrolytic ATP binding site of dynein motor region (AAA_6)Hydrolytic ATP binding site of dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6) [1]. This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis [2]. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site [1].
Domain
PF12781ATP-binding dynein motor region (AAA_9)ATP-binding dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk [1].
Domain
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
PF18199Dynein heavy chain C-terminal domain (Dynein_C)Dynein heavy chain C-terminal domainThis family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading ove ...This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain [3].
Domain
PF12780P-loop containing dynein motor region D4 (AAA_8)P-loop containing dynein motor region D4The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor [1].
Domain
PF17852Dynein heavy chain AAA lid domain (Dynein_AAA_lid)Dynein heavy chain AAA lid domainThis entry corresponds to the extension domain of AAA domain 5 in the dynein heavy chain [1]. This domain is composed of 8 alpha helices [1].Domain
PF08393Dynein heavy chain, N-terminal region 2 (DHC_N2)Dynein heavy chain, N-terminal region 2- Family
PF17857AAA+ lid domain (AAA_lid_1)AAA+ lid domainThis domain represents the AAA lid domain from dynein heavy chain D3.Domain
PF03028Dynein heavy chain region D6 P-loop domain (Dynein_heavy)Dynein heavy chain region D6 P-loop domainThis family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved i ...This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains [1]. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained [2].
Domain
PF12777Microtubule-binding stalk of dynein motor (MT)Microtubule-binding stalk of dynein motorthe 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [1].
Domain
PF12775P-loop containing dynein motor region (AAA_7)P-loop containing dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydr ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliophathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs) [1].
Domain
PF18198Dynein heavy chain AAA lid domain (AAA_lid_11)Dynein heavy chain AAA lid domainThis family represents the AAA lid domain found neat the C-terminal region of dynein heavy chain.Domain
PF12774Hydrolytic ATP binding site of dynein motor region (AAA_6)Hydrolytic ATP binding site of dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities: AAA1-AAA6) [1]. This is the first site (out of four nucleotide binding sites in the dynein motor) where the movement depends on ATP hydrolysis [2]. When this site is nucleotide free or bound to ADP, the microtubule binding domain (MTBD) binds to the microtubule and the linker adopts the straight post-power-stroke conformation. Upon ATP binding and hydrolysis, the MTBD detaches from the microtubule and the linker is primed into the pre-power-stroke conformation. Dynein's AAA+ domains are each divided into an alpha/beta large subdomain designated with an L and and alpha small subdomains designated with an S. This is the AAA1 large (AAA1L) subdomain with the accompanying small subdomain (AAA1S). AAA1L, AAA1S and AAA2L enclose ADP.vanadate (ADP.Vi, ATP-hydrolysis transition state analogue). The AAA1L sensor-I loop, which varies in position depending on dynein's nucleotide state, swings in to contact AAA2L forming the important AAA1 nucleotide-binding site [1].
Domain
PF12781ATP-binding dynein motor region (AAA_9)ATP-binding dynein motor regionThis domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydro ...This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the fifth AAA+ domain subdomain AAA5S. Structural analysis reveal that it is the coiled-coil buttress interface. The relative movement of AAA5S together with the stalk (AAA4S), is coupled to rearrangements in the AAA+ ring. Closure of the AAA1 site and the rigid body movement of AAA2-AAA4 force the AAA4/AAA5 interface to close and the AAA6L subdomain to rotate towards the ring centre. The AAA5S subdomain rotates as a unit together with AAA6L, and this movement pulls the buttress relative to the stalk [1].
Domain
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
PF18199Dynein heavy chain C-terminal domain (Dynein_C)Dynein heavy chain C-terminal domainThis family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading ove ...This family represents the C-terminal domain of dynein heavy chain. This domain is a complex structure comprising six alpha-helices and an incomplete six-stranded antiparallel beta-barrel. The shape of this domain is distinctively flat, spreading over the AAA1, AAA5 and AAA6 domain [3].
Domain
PF12780P-loop containing dynein motor region D4 (AAA_8)P-loop containing dynein motor region D4The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D4 ATP-binding region of the motor [1].
Domain
PF17852Dynein heavy chain AAA lid domain (Dynein_AAA_lid)Dynein heavy chain AAA lid domainThis entry corresponds to the extension domain of AAA domain 5 in the dynein heavy chain [1]. This domain is composed of 8 alpha helices [1].Domain
PF08393Dynein heavy chain, N-terminal region 2 (DHC_N2)Dynein heavy chain, N-terminal region 2- Family
PF17857AAA+ lid domain (AAA_lid_1)AAA+ lid domainThis domain represents the AAA lid domain from dynein heavy chain D3.Domain
PF03028Dynein heavy chain region D6 P-loop domain (Dynein_heavy)Dynein heavy chain region D6 P-loop domainThis family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved i ...This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains [1]. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained [2].
Domain
PF12777Microtubule-binding stalk of dynein motor (MT)Microtubule-binding stalk of dynein motorthe 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures describ ...the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This family is the region between D4 and D5 and is the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [1].
Domain
D,
R [auth d]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1- Domain
PF01221Dynein light chain type 1 (Dynein_light)Dynein light chain type 1- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E,
S [auth e]
Flagellar outer dynein arm intermediate protein, putative- -
Dynein light chain roadblock-type 2 protein- - -
Dynein light chain-
Dynein light chain 2A- - -
Q [auth Y]Shulin- - -
Dynein-1-alpha heavy chain, flagellar inner arm I1 complex protein, putative
Dynein light chain-
Dynein light chain-
Dynein light chain-
Dynein light chain tctex-type 1 protein- - -
Thioredoxin -
Outer arm dynein beta heavy chain
Dynein heavy chain, outer arm protein
D,
R [auth d]
Dynein intermediate chain 2- - -
Dynein light chain roadblock-type 2 protein- - -
Dynein light chain-
Dynein light chain-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E,
S [auth e]
IPR001680WD40 repeatRepeat
E,
S [auth e]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E,
S [auth e]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR004942Roadblock/LAMTOR2 domainDomain
IPR037177Dynein light chain superfamilyHomologous Superfamily
IPR001372Dynein light chain, type 1/2Family
IPR005334Dynein light chain Tctex-1 likeFamily
IPR038586Tctex-1-like superfamilyHomologous Superfamily
Q [auth Y]IPR040342Uncharacterized protein C20orf194-likeFamily
IPR026983Dynein heavy chainFamily
IPR002909IPT domainDomain
IPR013602Dynein heavy chain, linkerDomain
IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
IPR041228Dynein heavy chain, C-terminal domainDomain
IPR015915Kelch-type beta propellerHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR041466Dynein heavy chain, AAA 5 extension domainDomain
IPR041658Dynein heavy chain AAA lid domainDomain
IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
IPR024743Dynein heavy chain, coiled coil stalkDomain
IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
IPR017868Filamin/ABP280 repeat-likeRepeat
IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
IPR004273Dynein heavy chain region D6 P-loop domainDomain
IPR024317Dynein heavy chain, AAA module D4Domain
IPR037177Dynein light chain superfamilyHomologous Superfamily
IPR001372Dynein light chain, type 1/2Family
IPR037177Dynein light chain superfamilyHomologous Superfamily
IPR001372Dynein light chain, type 1/2Family
IPR037177Dynein light chain superfamilyHomologous Superfamily
IPR001372Dynein light chain, type 1/2Family
IPR005334Dynein light chain Tctex-1 likeFamily
IPR038586Tctex-1-like superfamilyHomologous Superfamily
IPR017937Thioredoxin, conserved siteConserved Site
IPR013766Thioredoxin domainDomain
IPR005746ThioredoxinFamily
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR026983Dynein heavy chainFamily
IPR013602Dynein heavy chain, linkerDomain
IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
IPR041228Dynein heavy chain, C-terminal domainDomain
IPR041466Dynein heavy chain, AAA 5 extension domainDomain
IPR041658Dynein heavy chain AAA lid domainDomain
IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
IPR024743Dynein heavy chain, coiled coil stalkDomain
IPR013594Dynein heavy chain, tailDomain
IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
IPR004273Dynein heavy chain region D6 P-loop domainDomain
IPR024317Dynein heavy chain, AAA module D4Domain
IPR026983Dynein heavy chainFamily
IPR013602Dynein heavy chain, linkerDomain
IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
IPR041228Dynein heavy chain, C-terminal domainDomain
IPR003593AAA+ ATPase domainDomain
IPR041466Dynein heavy chain, AAA 5 extension domainDomain
IPR041658Dynein heavy chain AAA lid domainDomain
IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
IPR024743Dynein heavy chain, coiled coil stalkDomain
IPR013594Dynein heavy chain, tailDomain
IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
IPR004273Dynein heavy chain region D6 P-loop domainDomain
IPR024317Dynein heavy chain, AAA module D4Domain
D,
R [auth d]
IPR001680WD40 repeatRepeat
D,
R [auth d]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D,
R [auth d]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR004942Roadblock/LAMTOR2 domainDomain
IPR037177Dynein light chain superfamilyHomologous Superfamily
IPR001372Dynein light chain, type 1/2Family
IPR037177Dynein light chain superfamilyHomologous Superfamily
IPR001372Dynein light chain, type 1/2Family