6ZXA | pdb_00006zxa

LH2 complex from Marichromatium purpuratum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
N	d6zxan_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)
L	d6zxal_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)
J	d6zxaj_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)
H	d6zxah_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)
F	d6zxaf_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)
D	d6zxad_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)
B	d6zxab_	Membrane and cell surface proteins and peptides	Light-harvesting complex subunits	Light-harvesting complex subunits	automated matches	automated matches	(Marichromatium purpuratum 984 ) [TaxId: 765910 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N	SCOP2 Family	Light-harvesting complex subunits	8102712	4003043	SCOP2 (2022-06-29)
N	SCOP2 Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2 (2022-06-29)
L	SCOP2B Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Light-harvesting complex subunits	8102713	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	Lactamase_B	e6zxaN1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
L	Lactamase_B	e6zxaL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
J	Lactamase_B	e6zxaJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
H	Lactamase_B	e6zxaH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
F	Lactamase_B	e6zxaF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
D	Lactamase_B	e6zxaD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
B	Lactamase_B	e6zxaB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
M	Lactamase_B	e6zxaM1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
K	Lactamase_B	e6zxaK1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
I	Lactamase_B	e6zxaI1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
G	Lactamase_B	e6zxaG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
E	Lactamase_B	e6zxaE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
C	Lactamase_B	e6zxaC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)
A	Lactamase_B	e6zxaA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Lactamase_B	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N	Light-harvesting protein B:800-850 subunit beta	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A, C, E, G, I A, C, E, G, I, K, M	LHC domain-containing protein	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex intracellular anatomical structure light-harvesting complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N	IPR035889	Light-harvesting complex	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N	IPR002362	Light-harvesting protein B beta chain	Family
A, C, E, G, I A, C, E, G, I, K, M	IPR018332	Antenna complex, alpha subunit	Family
A, C, E, G, I A, C, E, G, I, K, M	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Light-harvesting complexes from bacteria

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Light-Harvesting Complexes	Light-Harvesting Complex LHC-II

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.