6ZV6 | pdb_00006zv6

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
GA [auth g]d6zv6g_ All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1 or RACK1) (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth H]RNA_pol_Rpb1_5e6zv6H1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
H [auth G]RNA_pol_Rpb1_5e6zv6G1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
G [auth F]RNA_pol_Rpb1_5e6zv6F1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
F [auth E]RNA_pol_Rpb1_5e6zv6E1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
E [auth D]RNA_pol_Rpb1_5e6zv6D1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
D [auth C]RNA_pol_Rpb1_5e6zv6C1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
IA [auth h]CoA_binding_2e6zv6h1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: CoA_binding_2ECOD (v295)
HA [auth T]RNA_pol_Rpb1_5e6zv6T1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
GA [auth g]RNA_pol_Rpb1_5e6zv6g1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
FA [auth f]RNA_pol_Rpb1_5e6zv6f1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
EA [auth e]RNA_pol_Rpb1_5e6zv6e1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
DA [auth d]RNA_pol_Rpb1_5e6zv6d1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
C [auth B]RNA_pol_Rpb1_5e6zv6B1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
CA [auth c]RNA_pol_Rpb1_5e6zv6c1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
BA [auth b]RNA_pol_Rpb1_5e6zv6b1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
AA [auth Z]RNA_pol_Rpb1_5e6zv6Z1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
Z [auth Y]RNA_pol_Rpb1_5e6zv6Y1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
Y [auth X]RNA_pol_Rpb1_5e6zv6X1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
X [auth W]RNA_pol_Rpb1_5e6zv6W1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
W [auth V]RNA_pol_Rpb1_5e6zv6V1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
V [auth U]RNA_pol_Rpb1_5e6zv6U1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
U [auth a]CoA_binding_2e6zv6a1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: CoA_binding_2ECOD (v295)
T [auth S]RNA_pol_Rpb1_5e6zv6S1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
B [auth A]RNA_pol_Rpb1_5e6zv6A1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
S [auth R]RNA_pol_Rpb1_5e6zv6R1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
R [auth Q]RNA_pol_Rpb1_5e6zv6Q1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
Q [auth P]RNA_pol_Rpb1_5e6zv6P1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
P [auth O]RNA_pol_Rpb1_5e6zv6O1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
O [auth N]RNA_pol_Rpb1_5e6zv6N1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
N [auth M]RNA_pol_Rpb1_5e6zv6M1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
M [auth L]RNA_pol_Rpb1_5e6zv6L1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
L [auth K]RNA_pol_Rpb1_5e6zv6K1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
K [auth J]RNA_pol_Rpb1_5e6zv6J1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)
J [auth I]RNA_pol_Rpb1_5e6zv6I1 A: alpha arraysX: DNA methylase specificity domainH: BromodomainT: BromodomainF: RNA_pol_Rpb1_5ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E [auth D]3.30.300.20 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth H]40S ribosomal protein S7
H [auth G]40S ribosomal protein S6
G [auth F]40S ribosomal protein S5
F [auth E]40S ribosomal protein S4, X isoform
E [auth D]40S ribosomal protein S3
D [auth C]40S ribosomal protein S2
IA [auth h]Serine/threonine-protein kinase RIO1
HA [auth T]40S ribosomal protein S19
GA [auth g]Receptor of activated protein C kinase 1
FA [auth f]Ubiquitin-40S ribosomal protein S27a
EA [auth e]40S ribosomal protein S30
DA [auth d]40S ribosomal protein S29
C [auth B]40S ribosomal protein S3a
CA [auth c]40S ribosomal protein S28
BA [auth b]40S ribosomal protein S27
AA [auth Z]40S ribosomal protein S25
Z [auth Y]40S ribosomal protein S24
Y [auth X]40S ribosomal protein S23
X [auth W]40S ribosomal protein S15a
W [auth V]40S ribosomal protein S21
V [auth U]40S ribosomal protein S20
U [auth a]40S ribosomal protein S26
T [auth S]40S ribosomal protein S18
B [auth A]40S ribosomal protein SA
S [auth R]40S ribosomal protein S17
R [auth Q]40S ribosomal protein S16
Q [auth P]40S ribosomal protein S15
P [auth O]40S ribosomal protein S14
O [auth N]40S ribosomal protein S13
N [auth M]40S ribosomal protein S12
M [auth L]40S ribosomal protein S11
L [auth K]40S ribosomal protein S10
K [auth J]40S ribosomal protein S9
J [auth I]40S ribosomal protein S8
A [auth 2]18S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth H]IPR000554Small ribosomal subunit protein eS7Family
I [auth H]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
H [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth G]IPR001377Small ribosomal subunit protein eS6Family
H [auth G]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth F]IPR000235Small ribosomal subunit protein uS7Family
G [auth F]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
F [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth E]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
F [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth E]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
F [auth E]IPR002942RNA-binding S4 domainDomain
F [auth E]IPR000876Small ribosomal subunit protein eS4Family
F [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth E]IPR005824KOWDomain
E [auth D]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
E [auth D]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth D]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth D]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
E [auth D]IPR004044K Homology domain, type 2Domain
E [auth D]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth D]IPR057258Small ribosomal subunit protein uS3Family
E [auth D]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
D [auth C]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
D [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth C]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
D [auth C]IPR000851Small ribosomal subunit protein uS5Family
D [auth C]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth C]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IA [auth h]IPR018935RIO kinase, conserved siteConserved Site
IA [auth h]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IA [auth h]IPR051272RIO-type Ser/Thr kinaseFamily
IA [auth h]IPR017407Serine/threonine-protein kinase Rio1Family
IA [auth h]IPR018934RIO-type domainDomain
IA [auth h]IPR000687RIO kinaseDomain
HA [auth T]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
HA [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
HA [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
HA [auth T]IPR001266Small ribosomal subunit protein eS19Family
GA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
GA [auth g]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
GA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
GA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth g]IPR001680WD40 repeatRepeat
FA [auth f]IPR019954Ubiquitin conserved siteConserved Site
FA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
FA [auth f]IPR050158Ubiquitin and ubiquitin-likeFamily
FA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth f]IPR000626Ubiquitin-like domainDomain
FA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
FA [auth f]IPR019956Ubiquitin domainDomain
FA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
EA [auth e]IPR019954Ubiquitin conserved siteConserved Site
EA [auth e]IPR006846Small ribosomal subunit protein eS30Family
EA [auth e]IPR039415Ubiquitin-like protein FUBIDomain
EA [auth e]IPR000626Ubiquitin-like domainDomain
EA [auth e]IPR019956Ubiquitin domainDomain
EA [auth e]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
DA [auth d]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
DA [auth d]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
DA [auth d]IPR001209Small ribosomal subunit protein uS14Family
DA [auth d]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
C [auth B]IPR001593Small ribosomal subunit protein eS1Family
C [auth B]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
C [auth B]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
CA [auth c]IPR028626Ribosomal protein eS28 conserved siteConserved Site
CA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth c]IPR000289Small ribosomal subunit protein eS28Family
BA [auth b]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
BA [auth b]IPR000592Small ribosomal subunit protein eS27Family
BA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth Z]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AA [auth Z]IPR004977Small ribosomal subunit protein eS25Family
Z [auth Y]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
Z [auth Y]IPR001976Small ribosomal subunit protein eS24Family
Z [auth Y]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth Y]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Y [auth X]IPR006032Small ribosomal subunit protein uS12Family
Y [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth X]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
X [auth W]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
X [auth W]IPR000630Small ribosomal subunit protein uS8Family
X [auth W]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
W [auth V]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
W [auth V]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
W [auth V]IPR001931Small ribosomal subunit protein eS21Family
V [auth U]IPR027486Small ribosomal subunit protein uS10 domainDomain
V [auth U]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
V [auth U]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
V [auth U]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
V [auth U]IPR001848Small ribosomal subunit protein uS10Family
U [auth a]IPR047864Ribosomal protein eS26, conserved siteConserved Site
U [auth a]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
U [auth a]IPR000892Small ribosomal subunit protein eS26Family
T [auth S]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
T [auth S]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
T [auth S]IPR001892Small ribosomal subunit protein uS13Family
T [auth S]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
B [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth A]IPR001865Small ribosomal subunit protein uS2Family
B [auth A]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
B [auth A]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
B [auth A]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
B [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth A]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
S [auth R]IPR001210Small ribosomal subunit protein eS17Family
S [auth R]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
S [auth R]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
R [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
R [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
R [auth Q]IPR000754Small ribosomal subunit protein uS9Family
R [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Q [auth P]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Q [auth P]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth P]IPR002222Small ribosomal subunit protein uS19Family
Q [auth P]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
P [auth O]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
P [auth O]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
P [auth O]IPR001971Small ribosomal subunit protein uS11Family
O [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth N]IPR000589Small ribosomal subunit protein uS15Family
O [auth N]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
O [auth N]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
N [auth M]IPR000530Small ribosomal subunit protein eS12Family
N [auth M]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth M]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
N [auth M]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth L]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth L]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth L]IPR000266Small ribosomal subunit protein uS17Family
M [auth L]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
L [auth K]IPR037447Small ribosomal subunit protein eS10Family
L [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
L [auth K]IPR005326Plectin/eS10, N-terminalDomain
K [auth J]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
K [auth J]IPR002942RNA-binding S4 domainDomain
K [auth J]IPR022801Small ribosomal subunit protein uS4Family
K [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
K [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
K [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
J [auth I]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
J [auth I]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
J [auth I]IPR001047Small ribosomal subunit protein eS8Family
J [auth I]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth H]P62081
H [auth G]P62753
G [auth F]P46782
F [auth E]P62701
E [auth D]P23396
D [auth C]P15880
IA [auth h]Q9BRS2
HA [auth T]P39019
GA [auth g]P63244
FA [auth f]P62979
EA [auth e]P62861
DA [auth d]P62273
CA [auth c]P62857
BA [auth b]P42677
AA [auth Z]P62851
Z [auth Y]P62847
Y [auth X]P62266
X [auth W]P62244
W [auth V]P63220
V [auth U]P60866
U [auth a]P62854
T [auth S]P62269
B [auth A]P08865
S [auth R]P08708
R [auth Q]P62249
Q [auth P]P62841
P [auth O]P62263
O [auth N]P62277
N [auth M]P25398
M [auth L]P62280
L [auth K]P46783
K [auth J]P46781
J [auth I]P62241

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
IA [auth h]PHD Parent Component: ASP

AA0033

:  L-aspartic 4-phosphoric anhydride MOD:00042
A [auth 2]6MZ Parent Component: A

AA0033

A [auth 2]UR3 Parent Component: U

AA0033