6ZNL | pdb_00006znl

Cryo-EM structure of the dynactin complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KSCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APro_isomerasee6znlA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
BPro_isomerasee6znlB1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
CWD40, Beta-prop_WDR3_2nde6znlC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)
DPro_isomerasee6znlD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
FPro_isomerasee6znlF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
IPro_isomerasee6znlI1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
GPro_isomerasee6znlG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
EPro_isomerasee6znlE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (v294.1)
HWD40, Beta-prop_WDR3_2nde6znlH1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)
LWD40, Beta-prop_WDR3_2nde6znlL1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)
P [auth U]WD40, Beta-prop_WDR3_2nde6znlU1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)
Q [auth V]WD40, Beta-prop_WDR3_2nde6znlV1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)
KWD40, Beta-prop_WDR3_2nde6znlK1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)
JWD40, Beta-prop_WDR3_2nde6znlJ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00022Actin (Actin)Actin- Family
PF01115F-actin capping protein, beta subunit (F_actin_cap_B)F-actin capping protein, beta subunit- Family
M,
N,
T [auth m],
U [auth n]
PF04912Dynamitin (Dynamitin)Dynamitin- Family
R [auth Y]PF05502Dynactin p62 family (Dynactin_p62)Dynactin p62 family- Family
Q [auth V]PF21711Dynactin subunit 5 (DCTN5)Dynactin subunit 5- Repeat
O,
V [auth o]
PF07426Dynactin subunit p22 (Dynactin_p22)Dynactin subunit p22- Family
PF01267F-actin capping protein alpha subunit (F-actin_cap_A)F-actin capping protein alpha subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
ARP1 actin related protein 1 homolog A -
Actin, cytoplasmic 1
F-actin capping protein beta subunit
M,
N,
T [auth m],
U [auth n]
Dynactin subunit 2-
P [auth U]Dynactin 6
R [auth Y]Dynactin subunit 4- -
Q [auth V]Dynactin subunit 5-
O,
V [auth o]
Dynactin subunit 3-
Capping protein (Actin filament) muscle Z-line, alpha 1
Arp11-
S [auth Z],
W [auth z]
Dynactin subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR020902Actin/actin-like conserved siteConserved Site
A, B, C, D, E
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
A, B, C, D, E
IPR004000Actin familyFamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
IPR001698F-actin-capping protein subunit betaFamily
IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
M,
N,
T [auth m],
U [auth n]
IPR028133DynamitinFamily
P [auth U]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
P [auth U]IPR027777Dynactin subunit 6Family
R [auth Y]IPR008603Dynactin subunit 4Family
Q [auth V]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
Q [auth V]IPR047125Dynactin subunit 5Family
O,
V [auth o]
IPR009991Dynactin subunit 3Family
IPR002189F-actin-capping protein subunit alphaFamily
IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
S [auth Z],
W [auth z]
IPR000938CAP Gly-rich domainDomain
S [auth Z],
W [auth z]
IPR036859CAP Gly-rich domain superfamilyHomologous Superfamily
S [auth Z],
W [auth z]
IPR022157Dynein associated proteinDomain