6Z0U | pdb_00006z0u

CryoEM structure of the Chikungunya virus nsP1 complex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	PF01660	Viral methyltransferase (Vmethyltransf)	Viral methyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	Polyprotein P1234	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity mRNA methyltransferase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity mRNA methyltransferase activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity phosphoric ester hydrolase activity phosphatase activity mRNA 5'-triphosphate monophosphatase activity hydrolase activity, acting on ester bonds polynucleotide 5'-phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides adenyl ribonucleotide binding adenyl nucleotide binding ATP binding ribonucleoside triphosphate phosphatase activity ATP hydrolysis activity ATP-dependent activity poly(A) RNA polymerase activity adenylyltransferase activity nucleic acid conformation isomerase activity isomerase activity helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity cation binding metal ion binding	symbiont-mediated suppression of host transcription symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression symbiont-mediated perturbation of host transcription modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process symbiont-mediated suppression of host transcription symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression symbiont-mediated perturbation of host transcription modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process symbiont-mediated suppression of host gene expression mRNA modification mRNA metabolic process RNA modification macromolecule modification symbiont-mediated suppression of host JAK-STAT cascade symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT activity symbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT1 activity symbiont-mediated perturbation of host signal transduction pathway regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process biological regulation regulation of organelle organization cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization gene expression DNA-templated transcription 7-methylguanosine mRNA capping 7-methylguanosine RNA capping RNA capping mRNA processing RNA 5'-end processing RNA processing proteolysis protein metabolic process symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region host intracellular membrane-bounded organelle host cell cytoplasmic vesicle membrane host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region host intracellular membrane-bounded organelle host cell cytoplasmic vesicle membrane host cell cytoplasm part host intracellular organelle host cell cytoplasmic vesicle host cell filopodium host cell projection host cell nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR047311	RNA-dependent RNA polymerase, togavirus	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR048891	Non-structural protein 3, zinc-binding domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR002589	Macro domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR001788	RNA-dependent RNA polymerase, alsuviricetes	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR002588	Alphavirus-like methyltransferase domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR043472	Macro domain-like	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR044936	Alphavirus nsP2 protease domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR049329	Tomato mosaic virus helicase, N-terminal domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR044371	Non-structural protein 3, X-domain-like	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR027351	(+) RNA virus helicase core domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR002620	Alphavirus nsp2, protease domain	Domain
A, B [auth C], C [auth E], D [auth G], E [auth I], A, B [auth C], C [auth E], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O], I [auth Q], J [auth S], K [auth V], L [auth X], M [auth Z], N [auth BA], O [auth DA], P [auth FA], Q [auth HA], R [auth JA], S [auth LA], T [auth NA], U [auth PA], V [auth RA], W [auth TA], X [auth VA]	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain