6YQ5 | pdb_00006yq5

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e6yq5L1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
K		e6yq5K1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
J		e6yq5J1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
I		e6yq5I1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
H		e6yq5H1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
G		e6yq5G1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
F		e6yq5F1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
E		e6yq5E1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
D		e6yq5D1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
C		e6yq5C1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
B		e6yq5B1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)
A		e6yq5A1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: VWD	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF06199	Phage tail tube protein (Phage_tail_2)	Phage tail tube protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Tail tube protein gp17.1*	-	viral gene expression viral process viral translational frameshifting viral translation symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral head-tail joining	virus tail, tube virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011855	Phage major tail protein TP901-1	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003961	Fibronectin type III	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.