Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein S30e-like8053453 3002190 SCOP2B (2022-06-29)
H [auth K]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053139 3000068 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
P [auth S]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
Q [auth R]SCOP2B Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2B (2022-06-29)
U [auth I]SCOP2B SuperfamilyHomeodomain-like8052958 3000001 SCOP2B (2022-06-29)
U [auth I]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052791 3001397 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053143 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]PF00900e6ybwC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
A [auth C]PF00467,PF16121e6ybwC2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
A [auth C]PF00900,PF01479,PF08071e6ybwC3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
BPF00366,PF16205e6ybwB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
C [auth E]PF00164e6ybwE1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
DPF00163,PF01479e6ybwD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
FPF04758e6ybwF1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
G [auth H]PF01667e6ybwH1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
H [auth K]PF01249e6ybwK1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
I [auth J]PF00410e6ybwJ1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
I [auth J]PF00410e6ybwJ2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
K [auth L]PF03719e6ybwL3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
K [auth L]PF00333e6ybwL2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
K [auth L]PF00333e6ybwL1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
L [auth O]PF01015e6ybwO1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
L [auth O]PF01015e6ybwO2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
O [auth P]PF00411e6ybwP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
P [auth S]PF01092e6ybwS1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
Q [auth R]PF01201e6ybwR1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
R [auth T]PF01282e6ybwT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
S [auth q]PF01176e6ybwq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01176ECOD (1.6)
T [auth p]PF01253e6ybwp1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF01253ECOD (1.6)
U [auth I]PF08069e6ybwI2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
U [auth I]PF00312e6ybwI1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
X [auth 9]PF05162e6ybw91 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
M [auth N]PF00318e6ybwN1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
N [auth Q]PF01283e6ybwQ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
E [auth G]PF01251e6ybwG1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth C]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
A [auth C]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
A [auth C]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
A [auth C]PF00467KOW motif (KOW)KOW motif- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
C [auth E]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
G [auth H]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
H [auth K]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
I [auth J]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
J [auth M]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
K [auth L]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
K [auth L]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
L [auth O]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
O [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
P [auth S]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
Q [auth R]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
R [auth T]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
S [auth q]PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.Domain
T [auth p]PF01253Translation initiation factor SUI1 (SUI1)Translation initiation factor SUI1- Domain
U [auth I]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
U [auth I]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
V [auth z]PF08597Translation initiation factor eIF3 subunit (eIF3_subunit)Translation initiation factor eIF3 subunit- Family
X [auth 9]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
M [auth N]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
M [auth N]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
N [auth Q]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
W [auth y]PF05470Eukaryotic translation initiation factor 3 subunit 8 N-terminus (eIF-3c_N)Eukaryotic translation initiation factor 3 subunit 8 N-terminus- Repeat
E [auth G]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]40S ribosomal protein S4, X isoform
40S ribosomal protein S11
C [auth E]40S ribosomal protein S23
40S ribosomal protein S9
40S ribosomal protein S30
G [auth H]40S ribosomal protein S27
H [auth K]40S ribosomal protein S21
I [auth J]40S ribosomal protein S15a
J [auth M]40S ribosomal protein S17
K [auth L]40S ribosomal protein S2
L [auth O]40S ribosomal protein S3a
O [auth P]40S ribosomal protein S14
P [auth S]40S ribosomal protein S6
Q [auth R]40S ribosomal protein S8
R [auth T]40S ribosomal protein S24
S [auth q]Eukaryotic translation initiation factor 1A, X-chromosomal
T [auth p]Eukaryotic translation initiation factor 1
U [auth I]40S ribosomal protein S13
V [auth z]Eukaryotic translation initiation factor 3 subunit J
X [auth 9]60S ribosomal protein L41
Y [auth A]18S rRNA---
M [auth N]40S ribosomal protein SA
N [auth Q]40S ribosomal protein S26
W [auth y]Eukaryotic translation initiation factor 3 subunit C
Z [auth 7]mRNA---
E [auth G]40S ribosomal protein S7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
A [auth C]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
A [auth C]IPR013845Small ribosomal subunit protein eS4, central regionDomain
A [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth C]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
A [auth C]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
A [auth C]IPR002942RNA-binding S4 domainDomain
A [auth C]IPR000876Small ribosomal subunit protein eS4Family
A [auth C]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
A [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
A [auth C]IPR005824KOWDomain
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
C [auth E]IPR006032Small ribosomal subunit protein uS12Family
C [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth E]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
IPR002942RNA-binding S4 domainDomain
IPR022801Small ribosomal subunit protein uS4Family
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR019954Ubiquitin conserved siteConserved Site
IPR000626Ubiquitin-like domainDomain
IPR006846Small ribosomal subunit protein eS30Family
IPR039415Ubiquitin-like protein FUBIDomain
IPR019956Ubiquitin domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
G [auth H]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
G [auth H]IPR000592Small ribosomal subunit protein eS27Family
G [auth H]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
H [auth K]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
H [auth K]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
H [auth K]IPR001931Small ribosomal subunit protein eS21Family
I [auth J]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
I [auth J]IPR000630Small ribosomal subunit protein uS8Family
I [auth J]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
J [auth M]IPR001210Small ribosomal subunit protein eS17Family
J [auth M]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
J [auth M]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
K [auth L]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth L]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
K [auth L]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth L]IPR000851Small ribosomal subunit protein uS5Family
K [auth L]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
K [auth L]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
K [auth L]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
L [auth O]IPR001593Small ribosomal subunit protein eS1Family
L [auth O]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
L [auth O]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
O [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
O [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth P]IPR001971Small ribosomal subunit protein uS11Family
P [auth S]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
P [auth S]IPR001377Small ribosomal subunit protein eS6Family
P [auth S]IPR014401Small ribosomal subunit protein eS6-likeFamily
Q [auth R]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
Q [auth R]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
Q [auth R]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
Q [auth R]IPR001047Small ribosomal subunit protein eS8Family
R [auth T]IPR001976Small ribosomal subunit protein eS24Family
R [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth T]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
S [auth q]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
S [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth q]IPR006196RNA-binding domain, S1, IF1 typeDomain
S [auth q]IPR001253Translation initiation factor 1A (eIF-1A)Family
T [auth p]IPR005874Eukaryotic translation initiation factor SUI1Family
T [auth p]IPR001950SUI1 domainDomain
T [auth p]IPR036877SUI1 domain superfamilyHomologous Superfamily
U [auth I]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
U [auth I]IPR000589Small ribosomal subunit protein uS15Family
U [auth I]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
U [auth I]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
V [auth z]IPR013906Eukaryotic translation initiation factor 3 subunit JFamily
V [auth z]IPR023194Eukaryotic translation initiation factor 3-like domain superfamilyHomologous Superfamily
X [auth 9]IPR007836Large ribosomal subunit protein eS32Family
M [auth N]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
M [auth N]IPR001865Small ribosomal subunit protein uS2Family
M [auth N]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
M [auth N]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
M [auth N]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
M [auth N]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
M [auth N]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
N [auth Q]IPR047864Ribosomal protein eS26, conserved siteConserved Site
N [auth Q]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
N [auth Q]IPR000892Small ribosomal subunit protein eS26Family
W [auth y]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
W [auth y]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth y]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth y]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
W [auth y]IPR000717Proteasome component (PCI) domainDomain
E [auth G]IPR000554Small ribosomal subunit protein eS7Family
E [auth G]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth C]PharosP62701
PharosP62280
C [auth E]PharosP62266
PharosP46781
PharosP62861
G [auth H]PharosP42677
H [auth K]PharosP63220
I [auth J]PharosP62244
J [auth M]PharosP08708
K [auth L]PharosP15880
O [auth P]PharosP62263
P [auth S]PharosP62753
Q [auth R]PharosP62241
R [auth T]PharosP62847
S [auth q]PharosP47813
T [auth p]PharosP41567
U [auth I]PharosP62277
V [auth z]PharosO75822
X [auth 9]PharosP62945
M [auth N]PharosP08865
N [auth Q]PharosP62854
W [auth y]PharosQ99613
E [auth G]PharosP62081