Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth H] | SCOP2B Superfamily | Ribosomal protein S7 | 8066001 | 3000799 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052745 | 3001473 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052746 | 3000135 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052747 | 3000334 | SCOP2B (2022-06-29) |
| KA [auth U] | SCOP2B Superfamily | S13-like H2TH domain | 8101439 | 3000053 | SCOP2B (2022-06-29) |
| FA [auth i] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053455 | 3002190 | SCOP2B (2022-06-29) |
| EA [auth h] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090991 | 3000034 | SCOP2B (2022-06-29) |
| C [auth D] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053208 | 3002166 | SCOP2B (2022-06-29) |
| BA [auth e] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052584 | 3000068 | SCOP2B (2022-06-29) |
| AA [auth d] | SCOP2 Family | Cold shock DNA-binding domain-like | 8095264 | 4001909 | SCOP2 (2022-06-29) |
| AA [auth d] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8095265 | 3000135 | SCOP2 (2022-06-29) |
| Y [auth b] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053150 | 3000068 | SCOP2B (2022-06-29) |
| V [auth Y] | SCOP2B Superfamily | Ribosomal protein S8 | 8079081 | 3000709 | SCOP2B (2022-06-29) |
| U [auth X] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053140 | 3000068 | SCOP2B (2022-06-29) |
| T [auth W] | SCOP2B Superfamily | Ribosomal protein S10 | 8097814 | 3001336 | SCOP2B (2022-06-29) |
| B [auth C] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8097826 | 3001397 | SCOP2B (2022-06-29) |
| S [auth V] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089322 | 3000034 | SCOP2B (2022-06-29) |
| Q [auth S] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082683 | 3000100 | SCOP2B (2022-06-29) |
| P [auth Q] | SCOP2B Superfamily | Translational machinery components | 8097824 | 3000571 | SCOP2B (2022-06-29) |
| O [auth P] | SCOP2B Superfamily | Homeodomain-like | 8052970 | 3000001 | SCOP2B (2022-06-29) |
| O [auth P] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052971 | 3001284 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | L30e-like | 8063980 | 3001739 | SCOP2B (2022-06-29) |
| M [auth N] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052707 | 3000135 | SCOP2B (2022-06-29) |
| M [auth N] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052708 | 3002138 | SCOP2B (2022-06-29) |
| J [auth K] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053075 | 3000433 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth J] | Cation_ATPase_C,Cation_ATPase_N | e6yanJ1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| H [auth I] | Cation_ATPase_C,Cation_ATPase_N | e6yanI1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| G [auth H] | Cation_ATPase_C,Cation_ATPase_N | e6yanH1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| F [auth G] | Cation_ATPase_C,Cation_ATPase_N | e6yanG1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| E [auth F] | Cation_ATPase_C,Cation_ATPase_N | e6yanF1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| D [auth E] | Cation_ATPase_C,Cation_ATPase_N | e6yanE1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| LA [auth R] | Cation_ATPase_C,Cation_ATPase_N | e6yanR1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| KA [auth U] | Cation_ATPase_C,Cation_ATPase_N | e6yanU1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| JA [auth B] | Cation_ATPase_C,Cation_ATPase_N | e6yanB1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| IA [auth A] | Cation_ATPase_C,Cation_ATPase_N | e6yanA1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| FA [auth i] | Cation_ATPase_C,Cation_ATPase_N | e6yani1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| EA [auth h] | Cation_ATPase_C,Cation_ATPase_N | e6yanh1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| DA [auth g] | Cation_ATPase_C,Cation_ATPase_N | e6yang1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| C [auth D] | Cation_ATPase_C,Cation_ATPase_N | e6yanD1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| CA [auth f] | Cation_ATPase_C,Cation_ATPase_N | e6yanf1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| BA [auth e] | Cation_ATPase_C,Cation_ATPase_N | e6yane1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| AA [auth d] | Cation_ATPase_C,Cation_ATPase_N | e6yand1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| Z [auth c] | Cation_ATPase_C,Cation_ATPase_N | e6yanc1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| Y [auth b] | Cation_ATPase_C,Cation_ATPase_N | e6yanb1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| X [auth a] | Cation_ATPase_C,Cation_ATPase_N | e6yana1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| W [auth Z] | Cation_ATPase_C,Cation_ATPase_N | e6yanZ1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| V [auth Y] | Cation_ATPase_C,Cation_ATPase_N | e6yanY1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| U [auth X] | Cation_ATPase_C,Cation_ATPase_N | e6yanX1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| T [auth W] | Cation_ATPase_C,Cation_ATPase_N | e6yanW1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| B [auth C] | Cation_ATPase_C,Cation_ATPase_N | e6yanC1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| S [auth V] | Cation_ATPase_C,Cation_ATPase_N | e6yanV1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| R [auth T] | Cation_ATPase_C,Cation_ATPase_N | e6yanT1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| Q [auth S] | Cation_ATPase_C,Cation_ATPase_N | e6yanS1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| P [auth Q] | Cation_ATPase_C,Cation_ATPase_N | e6yanQ1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| O [auth P] | Cation_ATPase_C,Cation_ATPase_N | e6yanP1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| N [auth O] | Cation_ATPase_C,Cation_ATPase_N | e6yanO1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| M [auth N] | Cation_ATPase_C,Cation_ATPase_N | e6yanN1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| L [auth M] | Cation_ATPase_C,Cation_ATPase_N | e6yanM1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| K [auth L] | Cation_ATPase_C,Cation_ATPase_N | e6yanL1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| J [auth K] | Cation_ATPase_C,Cation_ATPase_N | e6yanK1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
| A [auth l] | Cation_ATPase_C,Cation_ATPase_N | e6yanl1 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Cation_ATPase_C,Cation_ATPase_N | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth J] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| H [auth I] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
| H [auth I] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| G [auth H] | PF03297 | S25 ribosomal protein (Ribosomal_S25) | S25 ribosomal protein | - | Family |
| G [auth H] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| F [auth G] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| F [auth G] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| F [auth G] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| F [auth G] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| F [auth G] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| E [auth F] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| E [auth F] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| E [auth F] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| LA [auth R] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| KA [auth U] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| IA [auth A] | PF07541 | Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha) | Eukaryotic translation initiation factor 2 alpha subunit | - | Family |
| IA [auth A] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
| C [auth D] | PF01015 | Ribosomal S3Ae family (Ribosomal_S3Ae) | Ribosomal S3Ae family | - | Family |
| W [auth Z] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| V [auth Y] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| U [auth X] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| T [auth W] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| B [auth C] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| B [auth C] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| S [auth V] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| R [auth T] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
| Q [auth S] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| P [auth Q] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| O [auth P] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
| O [auth P] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| N [auth O] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| M [auth N] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| M [auth N] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| L [auth M] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| K [auth L] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| K [auth L] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| J [auth K] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |














