6Y7Q | pdb_00006y7q

Crystal Structure of the N-terminal PAS domain from the hERG3 Potassium Channel

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AAA]	SCOP2 Family	Flavin-binding PAS domain	8100593	4003660	SCOP2 (2022-06-29)
A [auth AAA]	SCOP2 Superfamily	PYP-like sensor domain (PAS domain)	8100594	3000471	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]		e6y7qAAA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA]	PF13426	PAS domain (PAS_9)	PAS domain	This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA]	Potassium voltage-gated channel subfamily H member 7	binding tetrapyrrole binding heme binding inward rectifier potassium channel activity monoatomic cation transmembrane transporter activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity potassium channel activity voltage-gated monoatomic cation channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity binding tetrapyrrole binding heme binding inward rectifier potassium channel activity monoatomic cation transmembrane transporter activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity potassium channel activity voltage-gated monoatomic cation channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity voltage-gated potassium channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity	localization transport monoatomic ion transport potassium ion transport monoatomic cation transport establishment of localization metal ion transport monoatomic ion transmembrane transport potassium ion transmembrane transport monoatomic cation transmembrane transport transmembrane transport cellular process biological regulation regulation of biological quality localization transport monoatomic ion transport potassium ion transport monoatomic cation transport establishment of localization metal ion transport monoatomic ion transmembrane transport potassium ion transmembrane transport monoatomic cation transmembrane transport transmembrane transport cellular process biological regulation regulation of biological quality regulation of membrane potential	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex transmembrane transporter complex membrane protein complex transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA]	IPR005821	Ion transport domain	Domain
A [auth AAA]	IPR003938	Potassium channel, voltage-dependent, EAG/ELK/ERG-like	Family
A [auth AAA]	IPR000014	PAS domain	Domain
A [auth AAA]	IPR000595	Cyclic nucleotide-binding domain	Domain
A [auth AAA]	IPR003967	Potassium channel, voltage-dependent, ERG	Family
A [auth AAA]	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
A [auth AAA]	IPR035965	PAS domain superfamily	Homologous Superfamily
A [auth AAA]	IPR050818	Potassium channel, voltage-dependent, EAG/ELK/ERG-like, animal-type	Family
A [auth AAA]	IPR018490	Cyclic nucleotide-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth AAA]	Pharos: Q9NS40	psoriasis atypical teratoid rhabdoid tumor estrogen-receptor positive breast cancer large cell medulloblastoma ovarian cancer breast carcinoma glioblastoma lung carcinoma estrogen-receptor negative breast cancer Lambert-Eaton myasthenic syndrome multiple sclerosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.