6Y3Z
Crystal structure of the Pby1 ATP-grasp enzyme bound to the S. cerevisiae mRNA decapping complex (Dcp1-Dcp2-Edc3)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05026 | e6y3zA2 | A: alpha arrays | X: Dcp2 box A domain (From Topology) | H: Dcp2 box A domain (From Topology) | T: Dcp2 box A domain | F: PF05026 | ECOD (1.6) |
A | PF00293 | e6y3zA1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
C | F_UNCLASSIFIED | e6y3zC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00293 | NUDIX domain (NUDIX) | NUDIX domain | - | Domain | |
PF05026 | Dcp2, box A domain (DCP2) | Dcp2, box A domain | This domain is always found to the amino terminal side of Pfam:PF00293. This domain is specific to mRNA decapping protein 2 and this region has been termed Box A [2]. Removal of the cap structure is catalysed by the Dcp1-Dcp2 complex [3]. | Domain | |
PF06058 | Dcp1-like decapping family (DCP1) | Dcp1-like decapping family | An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (Pfam:PF05026). The precise role of these proteins in the decapping reaction have not been es ... | Domain | |
D [auth P] | PF03133 | Tubulin-tyrosine ligase family (TTL) | Tubulin-tyrosine ligase family | - | Family |