6XTJ

The high resolution structure of the FERM domain of human FERMT2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]	F_UNCLASSIFIED	e6xtjAAA3	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth AAA]	PF00373	e6xtjAAA4	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: PF00373	ECOD (1.6)
A [auth AAA]	F_UNCLASSIFIED	e6xtjAAA2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth AAA]	PF18124	e6xtjAAA1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF18124	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA]	PF18124	Kindlin-2 N-terminal domain (Kindlin_2_N)	Kindlin-2 N-terminal domain	This is the N-terminal domain (K2-N) of Kindlin-2 protein present in Homo sapiens. Kindlin-2 is a regulator for heterodimeric integrin adhesion receptors promotes integrin activation. Activation depends on binding of the N-terminal domain to the inte ...	This is the N-terminal domain (K2-N) of Kindlin-2 protein present in Homo sapiens. Kindlin-2 is a regulator for heterodimeric integrin adhesion receptors promotes integrin activation. Activation depends on binding of the N-terminal domain to the integrin beta cytoplasmic tail (CT), which disrupts the receptors association with alpha-CT and triggers the conformational transitions in the receptor. K2-N contains a conserved positively charged surface that binds to membrane enriched with negatively charged phosphatidylinositol-(4,5)-bisphosphate (PIP2). K2-N is also very similar to the homologous kindlin-1 F0 [1].	Domain
A [auth AAA]	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA]	Fermitin family homolog 2,Fermitin family homolog 2,Fermitin family homolog 2	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding transforming growth factor beta receptor binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding cell adhesion molecule binding integrin binding kinase binding enzyme binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding transforming growth factor beta receptor binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding cell adhesion molecule binding integrin binding kinase binding enzyme binding protein kinase binding SMAD binding ion binding phosphatidylinositol-3,4,5-trisphosphate binding anion binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion positive regulation of substrate adhesion-dependent cell spreading regulation of biological process regulation of cellular process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion positive regulation of substrate adhesion-dependent cell spreading regulation of biological process regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of substrate adhesion-dependent cell spreading regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-substrate adhesion positive regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization cell junction assembly regulation of cell-substrate junction organization focal adhesion assembly positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis positive regulation of cell-matrix adhesion regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly negative regulation of vascular permeability regulation of vascular permeability multicellular organismal process system process circulatory system process vascular process in circulatory system regulation of biological quality blood circulation mesenchymal stem cell proliferation regulation of stem cell proliferation cell population proliferation positive regulation of cell population proliferation positive regulation of mesenchymal stem cell proliferation regulation of mesenchymal stem cell proliferation positive regulation of stem cell proliferation stem cell proliferation regulation of cell population proliferation developmental process multicellular organism development limb development appendage development anatomical structure development protein localization localization cellular localization cellular macromolecule localization macromolecule localization localization within membrane protein localization to membrane protein localization to cell junction cellular response to stimulus cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway response to stimulus cell surface receptor signaling pathway signaling cellular response to transforming growth factor beta stimulus response to endogenous stimulus cell communication cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway signal transduction enzyme-linked receptor protein signaling pathway fat cell differentiation regulation of developmental process cellular developmental process negative regulation of developmental process negative regulation of biological process regulation of cell differentiation negative regulation of fat cell differentiation cell differentiation negative regulation of cellular process negative regulation of cell differentiation regulation of fat cell differentiation regulation of localization regulation of protein localization positive regulation of protein localization to nucleus regulation of protein localization to nucleus protein localization to nucleus regulation of cellular localization protein localization to organelle positive regulation of protein localization positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling regulation of epithelial to mesenchymal transition positive regulation of epithelial to mesenchymal transition mesenchyme development positive regulation of developmental process positive regulation of cell differentiation regulation of multicellular organismal process animal organ development tissue development epithelial to mesenchymal transition positive regulation of multicellular organismal process mesenchymal cell differentiation positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity integrin-mediated signaling pathway anatomical structure morphogenesis cell morphogenesis regulation of cell morphogenesis regulation of anatomical structure morphogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of response to wounding response to stress regulation of response to stress positive regulation of cell motility regulation of cell migration cell migration response to wounding cell motility regulation of wound healing, spreading of epidermal cells locomotion positive regulation of response to wounding wound healing epithelium development positive regulation of wound healing, spreading of epidermal cells morphogenesis of an epithelium epiboly involved in wound healing morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis positive regulation of wound healing regulation of locomotion regulation of wound healing epiboly wound healing, spreading of cells regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction adherens junction organization cell junction maintenance cellular component maintenance adherens junction maintenance cell-cell junction organization cell-cell junction maintenance regulation of cell shape regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly regulation of integrin activation positive regulation of integrin activation positive regulation of phosphorylation regulation of transferase activity positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process phosphorus metabolic process protein modification process positive regulation of protein phosphorylation protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation cellular metabolic process regulation of protein metabolic process regulation of cellular metabolic process primary metabolic process positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity macromolecule modification regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of cellular metabolic process positive regulation of protein modification process organic substance metabolic process positive regulation of myosin light chain kinase activity protein metabolic process positive regulation of protein kinase activity organonitrogen compound metabolic process positive regulation of transferase activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of phosphorylation regulation of myosin light chain kinase activity regulation of osteoblast differentiation osteoblast differentiation positive regulation of osteoblast differentiation ossification Wnt signaling pathway positive regulation of organelle organization regulation of cytoskeleton organization regulation of actin filament-based process regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly actin filament bundle organization positive regulation of stress fiber assembly actin filament-based process stress fiber assembly regulation of actin filament organization actin cytoskeleton organization actomyosin structure organization positive regulation of cytoskeleton organization actin filament organization positive regulation of supramolecular fiber organization regulation of organelle organization regulation of stress fiber assembly organelle organization contractile actin filament bundle assembly regulation of actomyosin structure organization actin filament bundle assembly regulation of actin cytoskeleton organization regulation of supramolecular fiber organization supramolecular fiber organization cytoskeleton organization	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell-cell junction adherens junction anchoring junction cell junction cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell-cell junction adherens junction anchoring junction cell junction cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane actin filament bundle actin cytoskeleton actomyosin intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle stress fiber contractile actin filament bundle non-membrane-bounded organelle sarcomere I band contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex focal adhesion cell-substrate junction cell cortex cell surface membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cell leading edge leading edge membrane plasma membrane bounded cell projection cell projection plasma membrane region lamellipodium membrane cell projection membrane lamellipodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA]	IPR019748	FERM central domain	Domain
A [auth AAA]	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A [auth AAA]	IPR001849	Pleckstrin homology domain	Domain
A [auth AAA]	IPR037837	Kindlin/fermitin, PH domain	Domain
A [auth AAA]	IPR040790	Kindlin-2, N-terminal	Domain
A [auth AAA]	IPR011993	PH-like domain superfamily	Homologous Superfamily
A [auth AAA]	IPR019749	Band 4.1 domain	Domain
A [auth AAA]	IPR037843	Kindlin/fermitin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth AAA]	Pharos: Q96AC1	urinary bladder cancer angle-closure glaucoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer psoriasis Alzheimer disease breast cancer cystic fibrosis ductal breast carcinoma in situ large cell medulloblastoma lung carcinoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia urinary bladder cancer angle-closure glaucoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer psoriasis Alzheimer disease breast cancer cystic fibrosis ductal breast carcinoma in situ large cell medulloblastoma lung carcinoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primary angle-closure glaucoma tuberculosis urinary bladder neoplasm breast carcinoma dermatomyositis invasive ductal breast carcinoma lung adenocarcinoma malignant colon neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma prostate carcinoma ulcerative colitis atopic eczema breast fibroadenoma Down syndrome Kindler syndrome lung cancer malignant pancreatic neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.