6XRF | pdb_00006xrf

EagT6 Tse6 NT complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Mog1p/PsbP-like	8040429	3000396	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mog1p/PsbP-like	8040429	3000396	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Mog1p/PsbP-like	8040429	3000396	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mog1p/PsbP-like	8040429	3000396	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Mog1p/PsbP-like	8040429	3000396	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mog1p/PsbP-like	8040429	3000396	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L36	e6xrfB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (v294.1)
D	Ribosomal_L36	e6xrfD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (v294.1)
H	Ribosomal_L36	e6xrfH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (v294.1)
G	Ribosomal_L36	e6xrfG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (v294.1)
E	Ribosomal_L36	e6xrfE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (v294.1)
A	Ribosomal_L36	e6xrfA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D, E, G A, B, D, E, G, H	PF08786	DcrB (DcrB)	DcrB	DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical ...	DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical regions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, D, E, G A, B, D, E, G, H	Effector EagT6	-	-	-
C, F, I	PAAR motif family protein	NAD+ nucleosidase activity hydrolase activity, acting on glycosyl bonds hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity NADP+ nucleosidase activity molecular sequestering activity toxin sequestering activity	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein secretion by the type VI secretion system macromolecule localization establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein secretion by the type VI secretion system macromolecule localization cellular process intracellular protein localization	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, D, E, G A, B, D, E, G, H	IPR014894	Inner membrane lipoprotein DcrB/EagT6	Family
A, B, D, E, G A, B, D, E, G, H	IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	Homologous Superfamily
C, F, I	IPR028238	Bacterial toxin 46	Domain
C, F, I	IPR008727	PAAR motif	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.