6XP5 | pdb_00006xp5

Head-Middle module of Mediator


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth Z]SCOP2 FamilyMediator of RNA polymerase II transcription subunit 31 8105982 4005652 SCOP2 (2022-06-29)
H [auth Z]SCOP2 SuperfamilyMediator of RNA polymerase II transcription subunit 31 8105983 3002846 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth H]Med8e6xp5H1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 8 (From Topology)H: Mediator of RNA polymerase II transcription subunit 8 (From Topology)T: Mediator of RNA polymerase II transcription subunit 8F: Med8ECOD (1.6)
H [auth Z]Med31e6xp5Z1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: Med31ECOD (1.6)
D [auth G]Med7e6xp5G2 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: MED7 hinge regionF: Med7ECOD (1.6)
D [auth G]F_UNCLASSIFIEDe6xp5G1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: F_UNCLASSIFIEDECOD (1.6)
C [auth F]Med6e6xp5F1 A: extended segmentsX: Mediator of RNA polymerase II transcription subunit 6 (From Topology)H: Mediator of RNA polymerase II transcription subunit 6 (From Topology)T: Mediator of RNA polymerase II transcription subunit 6F: Med6ECOD (1.6)
L [auth V]Med22e6xp5V1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 22 (From Topology)H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)T: Mediator of RNA polymerase II transcription subunit 22F: Med22ECOD (1.6)
K [auth R]F_UNCLASSIFIEDe6xp5R1 A: a+b complex topologyX: mRNA triphosphatase CET1-related (From Topology)H: mRNA triphosphatase CET1-related (From Topology)T: mRNA triphosphatase CET1-relatedF: F_UNCLASSIFIEDECOD (1.6)
J [auth K]Med11e6xp5K1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 11 (From Topology)H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)T: Mediator of RNA polymerase II transcription subunit 11F: Med11ECOD (1.6)
A [auth U]Med21e6xp5U1 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: RNA polymerase II holoenzyme component SRB7 (MED21)F: Med21ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth Z]PF05669SOH1 (Med31)SOH1- Family
F [auth N]PF26204Fungal Med14 domain (Med14_fung)Fungal Med14 domainThis domain is found in Mediator of RNA polymerase II transcription subunit 14 from Emericella nidulans (Med14) and similar fungal proteins. Med14 is a component of the Mediator complex, a coactivator involved in the regulated transcription of nearly ...This domain is found in Mediator of RNA polymerase II transcription subunit 14 from Emericella nidulans (Med14) and similar fungal proteins. Med14 is a component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. This domain shows an alpha-beta configuration.
Domain
E [auth I]PF07544RNA polymerase II transcription mediator complex subunit 9 (Med9)RNA polymerase II transcription mediator complex subunit 9- Family
C [auth F]PF04934MED6 mediator sub complex component (Med6)MED6 mediator sub complex component- Family
B [auth D]PF10018Vitamin-D-receptor interacting Mediator subunit 4 (Med4)Vitamin-D-receptor interacting Mediator subunit 4- Family
L [auth V]PF06179Surfeit locus protein 5 subunit 22 of Mediator complex (Med22)Surfeit locus protein 5 subunit 22 of Mediator complex- Family
K [auth R]PF09637Med18 protein (Med18)Med18 proteinMed18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ...Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators [1].
Domain
J [auth K]PF10280Mediator complex protein (Med11)Mediator complex protein- Family
A [auth U]PF11221Subunit 21 of Mediator complex (Med21)Subunit 21 of Mediator complex- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth H]Mediator of RNA polymerase II transcription subunit 8
H [auth Z]Mediator of RNA polymerase II transcription subunit 31
G [auth Q]Mediator of RNA polymerase II transcription subunit 17
F [auth N]Mediator of RNA polymerase II transcription subunit 14
E [auth I]Mediator of RNA polymerase II transcription subunit 9
D [auth G]Mediator of RNA polymerase II transcription subunit 7
C [auth F]Mediator of RNA polymerase II transcription subunit 6
B [auth D]Mediator of RNA polymerase II transcription subunit 4
O [auth c]HEAT---
N [auth b]Unknown peptide---
M [auth a]Mediator of RNA polymerase II transcription subunit 1
L [auth V]Med22
K [auth R]Mediator of RNA polymerase II transcription subunit 18
J [auth K]Mediator of RNA polymerase II transcription subunit 11
A [auth U]Mediator of RNA polymerase II transcription subunit 21