6XGC | pdb_00006xgc

CryoEM structure of influenza hemagglutinin A/Michigan/45/2015 in complex with cyno antibody 1C4

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth F]	SCOP2 Family	Influenza hemagglutinin (stalk)	8102610	4003840	SCOP2 (2022-06-29)
J [auth F]	SCOP2 Superfamily	Influenza hemagglutinin (stalk)	8102611	3001616	SCOP2 (2022-06-29)
F [auth D]	SCOP2B Superfamily	Influenza hemagglutinin (stalk)	8102611	3001616	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Influenza hemagglutinin (stalk)	8102611	3001616	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8102603	3001342	SCOP2B (2022-06-29)
E [auth C]	SCOP2 Family	Influenza hemagglutinin headpiece	8102602	4002506	SCOP2 (2022-06-29)
E [auth C]	SCOP2 Superfamily	Influenza hemagglutinin domain-like	8102603	3001342	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8102603	3001342	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth J]	Raptor_N	e6xgcJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
H [auth L]	Raptor_N	e6xgcL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
D [auth N]	Ras	e6xgcN1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.1)
K [auth I]	Raptor_N	e6xgcI1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
G [auth H]	Raptor_N	e6xgcH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
C [auth M]	Ras	e6xgcM1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.1)
J [auth F]	Raptor_N	e6xgcF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
F [auth D]	Raptor_N	e6xgcD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
B	Ras	e6xgcB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.1)
I [auth E]	Raptor_N	e6xgcE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
E [auth C]	Raptor_N	e6xgcC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.1)
A	Ras	e6xgcA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.1)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
D [auth N], H [auth L], L [auth J]	Light Chain	IGLV1	Lambda	hemagglutinin ha2 chain \| hemagglutinin ha1 chain	SAbDab (2026-03-27)
C [auth M], G [auth H], K [auth I]	Heavy Chain	IGHV3	-	hemagglutinin ha2 chain \| hemagglutinin ha1 chain	SAbDab (2026-03-27)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth N], H [auth L], L [auth J]	1C4 Fab light chain	-	-	-
C [auth M], G [auth H], K [auth I]	1C4 Fab heavy chain	-	-	-
B, F [auth D], J [auth F]	Hemagglutinin HA2 chain	host cell surface binding binding host cell surface receptor binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular process cellular component organization or biogenesis virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular process cellular component organization or biogenesis virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction non-lytic viral release viral budding virion assembly exit from host cell viral budding from plasma membrane viral release from host cell import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell	cellular anatomical structure membrane virion component virion membrane viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane other organism part
A, E [auth C], I [auth E]	Hemagglutinin HA1 chain	host cell surface binding binding host cell surface receptor binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular process cellular component organization or biogenesis virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular process cellular component organization or biogenesis virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction non-lytic viral release viral budding virion assembly exit from host cell viral budding from plasma membrane viral release from host cell import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell	cellular anatomical structure membrane virion component virion membrane viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, F [auth D], J [auth F]	IPR001364	Haemagglutinin, influenzavirus A/B	Family
B, F [auth D], J [auth F]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
B, F [auth D], J [auth F]	IPR000149	Haemagglutinin, influenzavirus A	Family
B, F [auth D], J [auth F]	IPR013828	Haemagglutinin, HA1 chain, alpha/beta domain superfamily	Homologous Superfamily
A, E [auth C], I [auth E]	IPR001364	Haemagglutinin, influenzavirus A/B	Family
A, E [auth C], I [auth E]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
A, E [auth C], I [auth E]	IPR000149	Haemagglutinin, influenzavirus A	Family
A, E [auth C], I [auth E]	IPR013828	Haemagglutinin, HA1 chain, alpha/beta domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.