6WXF

Cryo-EM reconstruction of VP5/VP8 assembly from rhesus rotavirus particles - Intermediate conformation

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 1]	PF17477	e6wxf12	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: PF17477	ECOD (1.6)
A [auth 1]	PF17478	e6wxf11	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: PF17478	ECOD (1.6)
B [auth 2]	PF17477	e6wxf22	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: PF17477	ECOD (1.6)
B [auth 2]	PF17478	e6wxf21	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: PF17478	ECOD (1.6)
C [auth 3]	PF17477	e6wxf32	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: PF17477	ECOD (1.6)
C [auth 3]	PF17478	e6wxf31	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: PF17478	ECOD (1.6)
D [auth A]	PF00980	e6wxfA1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
D [auth A]	PF00980	e6wxfA2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
E [auth B]	PF00980	e6wxfB1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
E [auth B]	PF00980	e6wxfB2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
F [auth C]	PF00980	e6wxfC1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
F [auth C]	PF00980	e6wxfC2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
G [auth D]	PF00980	e6wxfD2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
G [auth D]	PF00980	e6wxfD1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
H [auth E]	PF00980	e6wxfE2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
H [auth E]	PF00980	e6wxfE1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
I [auth F]	PF00980	e6wxfF1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
I [auth F]	PF00980	e6wxfF2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
J [auth G]	PF00980	e6wxfG2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
J [auth G]	PF00980	e6wxfG1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
K [auth H]	PF00980	e6wxfH1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
K [auth H]	PF00980	e6wxfH2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
L [auth I]	PF00980	e6wxfI2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
L [auth I]	PF00980	e6wxfI1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
M [auth J]	PF00980	e6wxfJ1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
M [auth J]	PF00980	e6wxfJ2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
N [auth K]	PF00980	e6wxfK1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
N [auth K]	PF00980	e6wxfK2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
O [auth L]	PF00980	e6wxfL2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
O [auth L]	PF00980	e6wxfL1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
P [auth M]	PF00980	e6wxfM2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
P [auth M]	PF00980	e6wxfM1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
Q [auth N]	PF00980	e6wxfN1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
Q [auth N]	PF00980	e6wxfN2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
R [auth O]	PF00980	e6wxfO1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
R [auth O]	PF00980	e6wxfO2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
S [auth P]	PF00980	e6wxfP2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
S [auth P]	PF00980	e6wxfP1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
T [auth Q]	PF00980	e6wxfQ1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
T [auth Q]	PF00980	e6wxfQ2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
U [auth R]	PF00980	e6wxfR2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00980	ECOD (1.6)
U [auth R]	PF00980	e6wxfR1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: PF00980	ECOD (1.6)
AA [auth f]	PF00434	e6wxff2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
AA [auth f]	PF00434	e6wxff1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
BA [auth g]	PF00434	e6wxfg2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
BA [auth g]	PF00434	e6wxfg1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
CA [auth h]	PF00434	e6wxfh2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
CA [auth h]	PF00434	e6wxfh1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
DA [auth i]	PF00434	e6wxfi1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
DA [auth i]	PF00434	e6wxfi2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
EA [auth j]	PF00434	e6wxfj2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
EA [auth j]	PF00434	e6wxfj1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
FA [auth k]	PF00434	e6wxfk2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
FA [auth k]	PF00434	e6wxfk1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
GA [auth l]	PF00434	e6wxfl1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
GA [auth l]	PF00434	e6wxfl2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
HA [auth m]	PF00434	e6wxfm2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
HA [auth m]	PF00434	e6wxfm1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
IA [auth n]	PF00434	e6wxfn2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
IA [auth n]	PF00434	e6wxfn1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
JA [auth o]	PF00434	e6wxfo1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
JA [auth o]	PF00434	e6wxfo2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
KA [auth p]	PF00434	e6wxfp2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
KA [auth p]	PF00434	e6wxfp1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
LA [auth q]	PF00434	e6wxfq2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
LA [auth q]	PF00434	e6wxfq1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
MA [auth r]	PF00434	e6wxfr1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
MA [auth r]	PF00434	e6wxfr2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
V [auth a]	PF00434	e6wxfa2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
V [auth a]	PF00434	e6wxfa1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
W [auth b]	PF00434	e6wxfb2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
W [auth b]	PF00434	e6wxfb1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
X [auth c]	PF00434	e6wxfc2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
X [auth c]	PF00434	e6wxfc1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
Y [auth d]	PF00434	e6wxfd2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
Y [auth d]	PF00434	e6wxfd1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
Z [auth e]	PF00434	e6wxfe1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)
Z [auth e]	PF00434	e6wxfe2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: PF00434	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	PF00980	Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)	Rotavirus major capsid protein VP6	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], B [auth 2], C [auth 3]	Outer capsid protein VP4	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of inner membrane symbiont entry into host cell via permeabilization of host membrane symbiont-mediated perturbation of host membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of inner membrane symbiont entry into host cell via permeabilization of host membrane symbiont-mediated perturbation of host membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism permeabilization of host organelle membrane involved in viral entry into host cell	host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle membrane host intracellular membrane-bounded organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part host cell plasma membrane host cell membrane host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle membrane host intracellular membrane-bounded organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part host cell plasma membrane host cell membrane viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid T=13 icosahedral viral capsid viral intermediate capsid
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], B [auth 2], C [auth 3]	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
A [auth 1], B [auth 2], C [auth 3]	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
A [auth 1], B [auth 2], C [auth 3]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3]	IPR035329	Rotavirus VP4 helical domain	Domain
A [auth 1], B [auth 2], C [auth 3]	IPR042546	Outer capsid protein VP4	Family
A [auth 1], B [auth 2], C [auth 3]	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], D [auth A], E [auth B], F [auth C], G [auth D], H [auth E], I [auth F], J [auth G], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], P [auth M], Q [auth N], R [auth O], S [auth P], T [auth Q], U [auth R]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	IPR001963	Glycoprotein VP7	Family
AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], AA [auth f], BA [auth g], CA [auth h], DA [auth i], EA [auth j], FA [auth k], GA [auth l], HA [auth m], IA [auth n], JA [auth o], KA [auth p], LA [auth q], MA [auth r], V [auth a], W [auth b], X [auth c], Y [auth d], Z [auth e]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily