6WRU

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082423 3000334 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8094170 3000713 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyTranslational proteins8089152 3000811 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076281 3001378 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyZn-binding ribosomal proteins8081583 3001320 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyZn-binding ribosomal proteins8075068 3001320 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyL35p-like8083334 3000790 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyRibosomal protein L368083312 3001346 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyRibosomal protein L48094174 3001146 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyRibosomal protein L138066059 3001134 SCOP2B (2022-06-29)
U [auth W]SCOP2B Superfamily50S Ribosomal protein L14-like8093892 3000433 SCOP2B (2022-06-29)
V [auth X]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070555 3001045 SCOP2B (2022-06-29)
W [auth Y]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076041 3000884 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089022 3000995 SCOP2B (2022-06-29)
BA [auth I]SCOP2B SuperfamilyRibosomal L27 protein-like8075030 3000539 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein L208094941 3000563 SCOP2B (2022-06-29)
DSCOP2 FamilyRibosomal protein l21p8094147 4001630 SCOP2 (2022-06-29)
DSCOP2 Superfamilyl21p-like8094148 3002005 SCOP2 (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L228076726 3001078 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8086046 3000210 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082503 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01245e6wruA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
J [auth K]PF00831e6wruK1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
K [auth L]PF00297e6wruL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
L [auth M]PF00327e6wruM1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
M [auth N]PF01783e6wruN1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
N [auth O]PF00471e6wruO1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
O [auth P]PF00468e6wruP1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
P [auth Q]PF01632e6wruQ1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
Q [auth R]PF00444e6wruR1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
R [auth S]PF00573e6wruS1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
S [auth U]PF00347e6wruU1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
BPF00181e6wruB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
BPF03947e6wruB2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
T [auth V]PF00572e6wruV1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
U [auth W]PF00238e6wruW1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
V [auth X]PF00828e6wruX1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
W [auth Y]PF00252e6wruY1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
X [auth Z]PF01196e6wruZ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
Y [auth a]PF00861e6wrua1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
BA [auth I]PF01016e6wruI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
CPF00453e6wruC1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
DPF00829e6wruD1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
EPF00237e6wruE1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
FPF00276e6wruF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
GPF00467,PF17136e6wruG1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
HPF01386e6wruH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
I [auth J]PF00830e6wruJ1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
J [auth K]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth L]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
L [auth M]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
M [auth N]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
N [auth O]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
O [auth P]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
P [auth Q]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
Q [auth R]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
R [auth S]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
S [auth U]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
T [auth V]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
U [auth W]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
V [auth X]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
W [auth Y]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
X [auth Z]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
Y [auth a]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
BA [auth I]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
I [auth J]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
50S ribosomal protein L19
J [auth K]50S ribosomal protein L29
K [auth L]50S ribosomal protein L3
L [auth M]50S ribosomal protein L30
M [auth N]50S ribosomal protein L32
N [auth O]50S ribosomal protein L33
O [auth P]50S ribosomal protein L34
P [auth Q]50S ribosomal protein L35
Q [auth R]50S ribosomal protein L36
R [auth S]50S ribosomal protein L4
S [auth U]50S ribosomal protein L6
50S ribosomal protein L2
T [auth V]50S ribosomal protein L13
U [auth W]50S ribosomal protein L14
V [auth X]50S ribosomal protein L15
W [auth Y]50S ribosomal protein L16
X [auth Z]50S ribosomal protein L17
Y [auth a]50S ribosomal protein L18
Z [auth 1]23S rRNA---
AA [auth 2]5S rRNA---
BA [auth I]50S ribosomal protein L27
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L22
50S ribosomal protein L23
50S ribosomal protein L24
uL25
I [auth J]50S ribosomal protein L28

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth K]IPR001854Large ribosomal subunit protein uL29Family
J [auth K]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
K [auth L]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
K [auth L]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
K [auth L]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
K [auth L]IPR000597Large ribosomal subunit protein uL3Family
L [auth M]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
L [auth M]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
L [auth M]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
M [auth N]IPR002677Large ribosomal subunit protein bL32Family
M [auth N]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
M [auth N]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
N [auth O]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
N [auth O]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
N [auth O]IPR001705Large ribosomal subunit protein bL33Family
N [auth O]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
O [auth P]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
O [auth P]IPR000271Large ribosomal subunit protein bL34Family
P [auth Q]IPR021137Large ribosomal subunit protein bL35-likeFamily
P [auth Q]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
P [auth Q]IPR001706Large ribosomal subunit protein bL35Family
P [auth Q]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
Q [auth R]IPR000473Large ribosomal subunit protein bL36Family
Q [auth R]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
R [auth S]IPR013005Large ribosomal subunit protein uL4-likeFamily
R [auth S]IPR002136Large ribosomal subunit protein uL4Family
R [auth S]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
S [auth U]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
S [auth U]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
S [auth U]IPR000702Large ribosomal subunit protein uL6-likeFamily
S [auth U]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
S [auth U]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
T [auth V]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
T [auth V]IPR005822Large ribosomal subunit protein uL13Family
T [auth V]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
T [auth V]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
U [auth W]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
U [auth W]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth W]IPR000218Large ribosomal subunit protein uL14Family
U [auth W]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
V [auth X]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
V [auth X]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth X]IPR030878Large ribosomal subunit protein uL15Family
V [auth X]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
V [auth X]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth Y]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
W [auth Y]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
W [auth Y]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
W [auth Y]IPR016180Large ribosomal subunit protein uL16 domainDomain
W [auth Y]IPR047873Large ribosomal subunit protein uL16Family
X [auth Z]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
X [auth Z]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
X [auth Z]IPR000456Large ribosomal subunit protein bL17Family
Y [auth a]IPR005484Large ribosomal subunit protein uL18Family
Y [auth a]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
BA [auth I]IPR001684Large ribosomal subunit protein bL27Family
BA [auth I]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR001021Ribosomal protein bL25, long-formFamily
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
IPR020057Large ribosomal subunit protein bL25, beta domainDomain
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
I [auth J]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
I [auth J]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
I [auth J]IPR026569Large ribosomal subunit protein bL28Family
I [auth J]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily