6WMN | pdb_00006wmn

Human poly-N-acetyl-lactosamine synthase structure demonstrates a modular assembly of catalytic subsites for GT-A glycosyltransferases

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e6wmnD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
C		e6wmnC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
B		e6wmnB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
A		e6wmnA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.90.550.50	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (utative)
C	3.90.550.50	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (utative)
B	3.90.550.50	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01762	Galactosyltransferase (Galactosyl_T)	Galactosyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2	UDP-glycosyltransferase activity glycosyltransferase activity acetylglucosaminyltransferase activity transferase activity N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity hexosyltransferase activity catalytic activity	carbohydrate derivative biosynthetic process proteoglycan biosynthetic process keratan sulfate proteoglycan biosynthetic process keratan sulfate proteoglycan metabolic process carbohydrate derivative metabolic process glycoprotein biosynthetic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process carbohydrate derivative biosynthetic process proteoglycan biosynthetic process keratan sulfate proteoglycan biosynthetic process keratan sulfate proteoglycan metabolic process carbohydrate derivative metabolic process glycoprotein biosynthetic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process proteoglycan metabolic process aminoglycan metabolic process aminoglycan biosynthetic process poly-N-acetyllactosamine metabolic process poly-N-acetyllactosamine biosynthetic process protein O-linked glycosylation multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development system process sensory perception of chemical stimulus sensory perception nervous system process sensory perception of smell response to peptide response to stimulus response to chemical response to cytokine response to leukemia inhibitory factor cellular response to cytokine stimulus cellular response to leukemia inhibitory factor	membrane-bounded organelle Golgi membrane intracellular anatomical structure Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002659	Glycosyl transferase, family 31	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9NY97	rheumatoid arthritis Graves disease ankylosing spondylitis Crohn disease juvenile dermatomyositis medulloblastoma ovarian cancer schizophrenia astrocytic tumor ductal breast carcinoma in situ hydrocephalus malignant mesothelioma oligodendroglioma psoriasis Sjogren syndrome rheumatoid arthritis Graves disease ankylosing spondylitis Crohn disease juvenile dermatomyositis medulloblastoma ovarian cancer schizophrenia astrocytic tumor ductal breast carcinoma in situ hydrocephalus malignant mesothelioma oligodendroglioma psoriasis Sjogren syndrome breast cancer exocrine pancreatic carcinoma invasive ductal breast carcinoma malignant pancreatic neoplasm osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.