The V1 region of human V-ATPase in state 1 (focused refinement)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| Q [auth N] | LRR_1,LRR_8 | e6wlzN1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| L [auth G] | LRR_1,LRR_8 | e6wlzG1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| P [auth K] | LRR_1,LRR_8 | e6wlzK1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| N [auth L] | LRR_1,LRR_8 | e6wlzL1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| K [auth M] | LRR_1,LRR_8 | e6wlzM1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| O [auth H] | LRR_1,LRR_8 | e6wlzH1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| M [auth I] | LRR_1,LRR_8 | e6wlzI1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| J | LRR_1,LRR_8 | e6wlzJ1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| F | LRR_1,LRR_8 | e6wlzF1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| E | LRR_1,LRR_8 | e6wlzE1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| D | LRR_1,LRR_8 | e6wlzD1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| C | LRR_1,LRR_8 | e6wlzC1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| B | LRR_1,LRR_8 | e6wlzB1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
| A | LRR_1,LRR_8 | e6wlzA1 | A: a/b three-layered sandwiches | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| L [auth G] | 1.10.287.3240 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| Q [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
| L [auth G] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | V-ATPase complete structure, state 1 with SidK and ADP |














