6WIM | pdb_00006wim

CdiB from Escherichia coli

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ShlB	e6wimA1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: ShlB	ECOD (1.6)
A	POTRA_2	e6wimA3	A: a+b duplicates or obligate multimers	X: Polypeptide transport-associated (POTRA) domain (From Topology)	H: Polypeptide transport-associated (POTRA) domain (From Topology)	T: Polypeptide transport-associated (POTRA) domain	F: POTRA_2	ECOD (1.6)
A	POTRA_3	e6wimA2	A: a+b duplicates or obligate multimers	X: Polypeptide transport-associated (POTRA) domain (From Topology)	H: Polypeptide transport-associated (POTRA) domain (From Topology)	T: Polypeptide transport-associated (POTRA) domain	F: POTRA_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.50	Mainly Beta	Beta Barrel	Porin	membrane protein fhac: a member of the omp85/tpsb transporter family	CATH (utative)
A	3.10.20.310	Alpha Beta	Roll	Ubiquitin-like (UB roll)	membrane protein fhac	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Outer membrane transporter CdiB	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity	localization transport monoatomic ion transport establishment of localization protein transport across the cell outer membrane establishment of protein localization secretion establishment of protein localization to extracellular region export from cell protein secretion protein localization to extracellular region protein secretion by the type V secretion system transmembrane transport secretion by cell localization transport monoatomic ion transport establishment of localization protein transport across the cell outer membrane establishment of protein localization secretion establishment of protein localization to extracellular region export from cell protein secretion protein localization to extracellular region protein secretion by the type V secretion system transmembrane transport secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	type V protein secretion system complex protein-containing complex cellular anatomical structure membrane pore complex membrane protein complex cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR034746	POTRA domain	Domain
A	IPR005565	Haemolysin activator HlyB, C-terminal	Domain
A	IPR051544	Two-partner secretion system outer membrane transporter	Family
A	IPR027282	Two partner secretion pathway transporter	Family
A	IPR013686	Polypeptide-transport-associated, ShlB-type	Domain
A	IPR035251	ShlB, POTRA domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Beta-barrel transmembrane	Omp85-TpsB transporters (n=16,S=20,22)	Two-partner secretion porin (n=16,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Outer Membrane Autotransporters	CdiB autotransporter

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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