6WGC

Atomic model of semi-attached mutant OCCM-DNA complex (ORC-Cdc6-Cdt1-Mcm2-7 with Mcm6 WHD truncation)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth B]SCOP2B SuperfamilyWinged helix DNA-binding domain8090224 3000034 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRecA-like P-loop NTPases8090226 3002019 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 9]PF09079e6wgc93 A: alpha arraysX: HTHH: HTHT: wingedF: PF09079ECOD (1.6)
A [auth 9]PF22606e6wgc92 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF22606ECOD (1.6)
A [auth 9]PF13401e6wgc91 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF13401ECOD (1.6)
B [auth A]PF21312e6wgcA2 A: alpha arraysX: HTHH: HTHT: wingedF: PF21312ECOD (1.6)
B [auth A]PF17872e6wgcA3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17872ECOD (1.6)
B [auth A]PF00004e6wgcA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
D [auth C]PF18137e6wgcC1 A: alpha arraysX: HTHH: HTHT: wingedF: PF18137ECOD (1.6)
D [auth C]PF07034e6wgcC3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF07034ECOD (1.6)
D [auth C]PF07034e6wgcC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF07034ECOD (1.6)
F [auth D]PF14629e6wgcD2 A: alpha arraysX: HTHH: HTHT: wingedF: PF14629ECOD (1.6)
F [auth D]PF14629e6wgcD3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF14629ECOD (1.6)
F [auth D]F_UNCLASSIFIEDe6wgcD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
H [auth 3]F_UNCLASSIFIEDe6wgc31 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 9]PF13401AAA domain (AAA_22)AAA domain- Domain
B [auth A]PF21312Origin recognition complex subunit 1 C-terminal winged HTH domain (ORC1_wHTH)Origin recognition complex subunit 1 C-terminal winged HTH domainThis entry represents the C-terminal winged helix-turn-helix domain found in the Origin recognition complex subunit 1 protein [1].Domain
B [auth A]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
C [auth B]PF04084Origin recognition complex subunit 2 (ORC2)Origin recognition complex subunit 2- Family
D [auth C]PF18137Origin recognition complex winged helix C-terminal (ORC_WH_C)Origin recognition complex winged helix C-terminalThis is the C-terminal winged-helix (WH) DNA-binding domain of the origin recognition complex present in Drosophila melanogaster. The WH domain is responsible for recognizing origin sequences [1].Domain
PF13191AAA ATPase domain (AAA_16)AAA ATPase domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily.Domain
PF14630Origin recognition complex (ORC) subunit 5 C-terminus (ORC5_C)Origin recognition complex (ORC) subunit 5 C-terminusThis entry represents the C-terminus of origin recognition complex subunit 5 [1,2], which consists of a winged helix domain (WHD).Domain
PF21639ORC5, lid domain (ORC5_lid)ORC5, lid domainORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold ...ORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold domain, constitutes the well-known AAA+ domain [1].
Domain
F [auth D]PF14629Origin recognition complex (ORC) subunit 4 C-terminus (ORC4_C)Origin recognition complex (ORC) subunit 4 C-terminus- Family
G [auth F]PF05460Origin recognition complex subunit 6 (ORC6) (ORC6)Origin recognition complex subunit 6 (ORC6)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 9]Cell division control protein 6
J [auth G]DNA (41-MER)---
K [auth H]DNA (41-MER)---
B [auth A]Origin recognition complex subunit 1
C [auth B]Origin recognition complex subunit 2
D [auth C]Origin recognition complex subunit 3
Origin recognition complex subunit 5
F [auth D]Origin recognition complex subunit 4
G [auth F]Origin recognition complex subunit 6
H [auth 3]DNA replication licensing factor MCM3
I [auth 7]DNA replication licensing factor MCM7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 9]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A [auth 9]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A [auth 9]IPR003593AAA+ ATPase domainDomain
A [auth 9]IPR016314Cell division protein Cdc6/18Family
A [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth A]IPR041083AAA lid domainDomain
B [auth A]IPR043151Bromo adjacent homology (BAH) domain superfamilyHomologous Superfamily
B [auth A]IPR048867Origin recognition complex subunit 1, C-terminal winged HTH domainDomain
B [auth A]IPR001025Bromo adjacent homology (BAH) domainDomain
B [auth A]IPR003593AAA+ ATPase domainDomain
B [auth A]IPR003959ATPase, AAA-type, coreDomain
B [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B]IPR007220Origin recognition complex, subunit 2Family
D [auth C]IPR020795Origin recognition complex, subunit 3Family
D [auth C]IPR018247EF-Hand 1, calcium-binding siteBinding Site
D [auth C]IPR040855Origin recognition complex subunit 3, winged helix C-terminalDomain
IPR048866ORC5, lid domainDomain
IPR047088Origin recognition complex subunit 5, C-terminalDomain
IPR041664Orc1-like, AAA ATPase domainDomain
IPR020796Origin recognition complex, subunit 5Family
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth D]IPR032705Origin recognition complex subunit 4, C-terminalDomain
F [auth D]IPR016527Origin recognition complex subunit 4Family
F [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth F]IPR016811Origin recognition complex, subunit 6, fungiFamily
G [auth F]IPR008721Origin recognition complex, subunit 6Family
H [auth 3]IPR031327Mini-chromosome maintenance proteinFamily
H [auth 3]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
H [auth 3]IPR003593AAA+ ATPase domainDomain
H [auth 3]IPR001208MCM domainDomain
H [auth 3]IPR041562MCM, AAA-lid domainDomain
H [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth 3]IPR027925MCM, N-terminal domainDomain
H [auth 3]IPR008046DNA replication licensing factor Mcm3Family
H [auth 3]IPR033762MCM OB domainDomain
H [auth 3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth 7]IPR031327Mini-chromosome maintenance proteinFamily
I [auth 7]IPR008050DNA replication licensing factor Mcm7Family
I [auth 7]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
I [auth 7]IPR003593AAA+ ATPase domainDomain
I [auth 7]IPR001208MCM domainDomain
I [auth 7]IPR041562MCM, AAA-lid domainDomain
I [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth 7]IPR027925MCM, N-terminal domainDomain
I [auth 7]IPR033762MCM OB domainDomain
I [auth 7]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily