6WFW
Crystal structure of Fab364 in complex with NPNA2 peptide from circumsporozoite protein
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | PF01378 | e6wfwG1 | A: a+b two layers | X: beta-Grasp | H: Immunoglobulin-binding domains (From Topology) | T: Immunoglobulin-binding domains | F: PF01378 | ECOD (1.6) |
B [auth H] | PF07654 | e6wfwH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth H] | PF07686 | e6wfwH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth L] | PF07654 | e6wfwL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth L] | PF07686 | e6wfwL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth G] | - | LINKER | - | - | - | TR | (LINKER) | IMGT (202416-0) |
B [auth H] | IMMUNOGLOBULIN G-BINDING PROTEIN G,H | (VH-LINKER-CH1) | - | IGHV3-33*03, IGHV3-33*06, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHJ5*01, IGHJ8*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | (L-KAPPA_VH-LINKER-CH1) | IMGT (202416-0) |
C [auth L] | IMMUNOGLOBULIN G-BINDING PROTEIN G,H | L-KAPPA | - | IGKV1-5*03, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | (L-KAPPA_VH-LINKER-CH1) | IMGT (202416-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G] | PF01378 | B domain (IgG_binding_B) | B domain | This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding protein G. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth G] | Immunoglobulin G-binding protein G | - | ||
B [auth H] | Fab364 heavy chain | - | - | - |
C [auth L] | Fab364 light chain | - | - | - |
D [auth P] | NPNA2 peptide | - |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth G] | IPR009063 | Immunoglobulin/albumin-binding domain superfamily | Homologous Superfamily |
A [auth G] | IPR019950 | M protein-type anchor domain | Domain |
A [auth G] | IPR005877 | YSIRK Gram-positive signal peptide | Domain |
A [auth G] | IPR000724 | IgG-binding B | Domain |
A [auth G] | IPR035152 | GA-like domain | Domain |
A [auth G] | IPR019931 | LPXTG cell wall anchor domain | Domain |
D [auth P] | IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat |
D [auth P] | IPR003067 | Plasmodium circumsporozoite protein | Family |
D [auth P] | IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily |