6WDR | pdb_00006wdr

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth I]SCOP2B Superfamily50S Ribosomal protein L14-like 8053083 3000433 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
BA [auth e]SCOP2B SuperfamilyRibosomal protein S30e-like 8053451 3002190 SCOP2B (2022-06-29)
Z [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyRibosomal protein S8 8096922 3000709 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053136 3000068 SCOP2B (2022-06-29)
S [auth U]SCOP2B SuperfamilyRibosomal protein S10 8098648 3001336 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyS13-like H2TH domain 8098450 3000053 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyRibosomal protein S19 8086076 3000686 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyL30e-like 8096946 3001739 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052736 3002138 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055713 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8061280 3001397 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth J]e6wdrJ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
H [auth I]e6wdrI1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
G [auth H]e6wdrH1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
F [auth G]e6wdrG1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
E [auth F]e6wdrF1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
D [auth E]e6wdrE1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
DA [auth g]e6wdrg1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
C [auth D]e6wdrD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
CA [auth f]e6wdrf1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
BA [auth e]e6wdre1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
AA [auth d]e6wdrd1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
Z [auth c]e6wdrc1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
Y [auth b]e6wdrb1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
X [auth Z]e6wdrZ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
W [auth Y]e6wdrY1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
V [auth X]e6wdrX1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
U [auth W]e6wdrW1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
T [auth V]e6wdrV1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
B [auth C]e6wdrC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
S [auth U]e6wdrU1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
R [auth T]e6wdrT1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
Q [auth S]e6wdrS1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
P [auth R]e6wdrR1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
O [auth Q]e6wdrQ1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
N [auth P]e6wdrP1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
M [auth N]e6wdrN1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
L [auth M]e6wdrM1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
K [auth L]e6wdrL1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
J [auth K]e6wdrK1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)
Ae6wdrA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth D]3.30.300.20 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (utative)
B [auth C]3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
B [auth C]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (utative)
P [auth R]1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor domain 2CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth J]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
H [auth I]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
G [auth H]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
F [auth G]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
F [auth G]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
E [auth F]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
D [auth E]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
D [auth E]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
D [auth E]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
D [auth E]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
D [auth E]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
D [auth E]PF00467KOW motif (KOW)KOW motif- Family
C [auth D]PF07650KH domain (KH_2)KH domainDomain
C [auth D]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
C [auth D]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
X [auth Z]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
W [auth Y]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
V [auth X]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
U [auth W]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
T [auth V]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
B [auth C]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
B [auth C]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
S [auth U]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
R [auth T]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
Q [auth S]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
P [auth R]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
O [auth Q]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
N [auth P]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
M [auth N]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. Domain
M [auth N]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
L [auth M]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
K [auth L]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth L]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
J [auth K]PF22298Tsr1, G-like domain (Tsr1_G-like)Tsr1, G-like domainThis entry represents the G-like (guanine nucleotide-binding domain) domain, found in Tsr1, a protein required for normal export of the pre-40S particles from the nucleus to the cytoplasm during 40S ribosomal subunit synthesis [1-5]. This domain adop ...This entry represents the G-like (guanine nucleotide-binding domain) domain, found in Tsr1, a protein required for normal export of the pre-40S particles from the nucleus to the cytoplasm during 40S ribosomal subunit synthesis [1-5]. This domain adopts a GTPase-like fold, but lacks a P-loop and is not predicted to bind GTP.
Domain
J [auth K]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth J]40S ribosomal protein S9-A
H [auth I]40S ribosomal protein S8-A
G [auth H]40S ribosomal protein S7-A
F [auth G]40S ribosomal protein S6-A
E [auth F]40S ribosomal protein S5
D [auth E]40S ribosomal protein S4-A
FA [auth 2]20S ribosomal RNA---
EA [auth k]Ribosome biogenesis protein TSR1
DA [auth g]Guanine nucleotide-binding protein subunit beta-like protein
C [auth D]40S ribosomal protein S3
CA [auth f]Ubiquitin-40S ribosomal protein S31
BA [auth e]40S ribosomal protein S30-A
AA [auth d]40S ribosomal protein S29-A
Z [auth c]40S ribosomal protein S28-A
Y [auth b]40S ribosomal protein S27-A
X [auth Z]40S ribosomal protein S25-A
W [auth Y]40S ribosomal protein S24-A
V [auth X]40S ribosomal protein S23-A
U [auth W]40S ribosomal protein S22-A
T [auth V]40S ribosomal protein S21-A
B [auth C]40S ribosomal protein S2
S [auth U]40S ribosomal protein S20
R [auth T]40S ribosomal protein S19-A
Q [auth S]40S ribosomal protein S18-A
P [auth R]40S ribosomal protein S17-A
O [auth Q]40S ribosomal protein S16-A
N [auth P]40S ribosomal protein S15
M [auth N]40S ribosomal protein S13
L [auth M]40S ribosomal protein S12
K [auth L]40S ribosomal protein S11-A
J [auth K]40S ribosomal protein S10-A
40S ribosomal protein S0-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth J]IPR002942RNA-binding S4 domainDomain
I [auth J]IPR022801Small ribosomal subunit protein uS4Family
I [auth J]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
I [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
H [auth I]IPR001047Small ribosomal subunit protein eS8Family
H [auth I]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
H [auth I]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth I]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
G [auth H]IPR000554Small ribosomal subunit protein eS7Family
G [auth H]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
F [auth G]IPR014401Small ribosomal subunit protein eS6-likeFamily
F [auth G]IPR001377Small ribosomal subunit protein eS6Family
F [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
E [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
E [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
E [auth F]IPR000235Small ribosomal subunit protein uS7Family
E [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
E [auth F]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
D [auth E]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
D [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
D [auth E]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
D [auth E]IPR002942RNA-binding S4 domainDomain
D [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
D [auth E]IPR000876Small ribosomal subunit protein eS4Family
D [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
D [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
D [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth E]IPR005824KOWDomain
EA [auth k]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
EA [auth k]IPR030387Bms1/Tsr1-type G domainDomain
EA [auth k]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
EA [auth k]IPR012948AARP2CNDomain
DA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
DA [auth g]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
DA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
DA [auth g]IPR001680WD40 repeatRepeat
C [auth D]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
C [auth D]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth D]IPR057258Small ribosomal subunit protein uS3Family
C [auth D]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth D]IPR004044K Homology domain, type 2Domain
C [auth D]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth D]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth D]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CA [auth f]IPR019954Ubiquitin conserved siteConserved Site
CA [auth f]IPR000626Ubiquitin-like domainDomain
CA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
CA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
CA [auth f]IPR019956Ubiquitin domainDomain
CA [auth f]IPR050158Ubiquitin and ubiquitin-likeFamily
CA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
CA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth e]IPR006846Small ribosomal subunit protein eS30Family
AA [auth d]IPR001209Small ribosomal subunit protein uS14Family
AA [auth d]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
AA [auth d]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
AA [auth d]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
Z [auth c]IPR028626Ribosomal protein eS28 conserved siteConserved Site
Z [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth c]IPR000289Small ribosomal subunit protein eS28Family
Y [auth b]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
Y [auth b]IPR000592Small ribosomal subunit protein eS27Family
Y [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth Z]IPR004977Small ribosomal subunit protein eS25Family
X [auth Z]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth Y]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
W [auth Y]IPR001976Small ribosomal subunit protein eS24Family
W [auth Y]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth Y]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
V [auth X]IPR006032Small ribosomal subunit protein uS12Family
V [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
V [auth X]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
U [auth W]IPR000630Small ribosomal subunit protein uS8Family
U [auth W]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
U [auth W]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
T [auth V]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
T [auth V]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
T [auth V]IPR001931Small ribosomal subunit protein eS21Family
B [auth C]IPR000851Small ribosomal subunit protein uS5Family
B [auth C]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
B [auth C]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
B [auth C]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
B [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
B [auth C]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
B [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
S [auth U]IPR001848Small ribosomal subunit protein uS10Family
S [auth U]IPR027486Small ribosomal subunit protein uS10 domainDomain
S [auth U]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
S [auth U]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
S [auth U]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
R [auth T]IPR001266Small ribosomal subunit protein eS19Family
R [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
R [auth T]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
R [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Q [auth S]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Q [auth S]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Q [auth S]IPR001892Small ribosomal subunit protein uS13Family
Q [auth S]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
P [auth R]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
P [auth R]IPR001210Small ribosomal subunit protein eS17Family
P [auth R]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
O [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
O [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
O [auth Q]IPR000754Small ribosomal subunit protein uS9Family
O [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth P]IPR002222Small ribosomal subunit protein uS19Family
N [auth P]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
N [auth P]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
N [auth P]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
M [auth N]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
M [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
M [auth N]IPR000589Small ribosomal subunit protein uS15Family
M [auth N]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
L [auth M]IPR000530Small ribosomal subunit protein eS12Family
L [auth M]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth M]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
L [auth M]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
K [auth L]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth L]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth L]IPR000266Small ribosomal subunit protein uS17Family
K [auth L]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
J [auth K]IPR037447Small ribosomal subunit protein eS10Family
J [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
J [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
J [auth K]IPR005326Plectin/eS10, N-terminalDomain
IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily