Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01381e6w1aA2 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: PF01381ECOD (1.6)
APF21259e6w1aA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF21259ECOD (1.6)
BPF01381e6w1aB2 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: PF01381ECOD (1.6)
BPF21259e6w1aB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF21259ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01381Helix-turn-helix (HTH_3)Helix-turn-helixThis large family of DNA binding helix-turn helix proteins includes Cro Swiss:P03036 and CI Swiss:P03034. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be ...This large family of DNA binding helix-turn helix proteins includes Cro Swiss:P03036 and CI Swiss:P03034. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family [1].
Domain
A, B
PF21259HTH-type transcriptional regulator Rgg, C-terminal domain (Rgg_C)HTH-type transcriptional regulator Rgg, C-terminal domainThis domain is found at the C-terminal end of HTH-type transcriptional regulator Rgg from Streptococcus gordonii, and similar proteins predominantly found in Firmicutes. Rgg is a peptide pheromone receptor that directly binds pheromones transported t ...This domain is found at the C-terminal end of HTH-type transcriptional regulator Rgg from Streptococcus gordonii, and similar proteins predominantly found in Firmicutes. Rgg is a peptide pheromone receptor that directly binds pheromones transported to the cytosol. The large C-terminal repeat domain contains five HTH folds and a capping helix that form a right-handed superhelical structure, resembling a TPR domain superhelix [1-5]. This domain is found associated with the N-terminal Pfam:PF01381.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Transcriptional regulator - -
C [auth E]DNA (30-MER)---
D [auth F]DNA (30-MER)---