6W0V
The Crystal Structure of the Mutant Nuclease Domain of Pyocin S8 with its Cognate Immunity Protein
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6w0va_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | automated matches | automated matches | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
B | d6w0vb_ | All alpha proteins | Acyl carrier protein-like | Colicin E immunity proteins | automated matches | automated matches | (Pseudomonas aeruginosa ) [TaxId: 287 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | HNH-motif | 8096535 | 4000889 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | His-Me finger endonucleases | 8096536 | 3001893 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Colicin E immunity proteins | 8096797 | 4000862 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Colicin E immunity proteins | 8096798 | 3001814 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21431 | e6w0vA1 | A: few secondary structure elements | X: His-Me finger endonucleases (From Homology) | H: His-Me finger endonucleases | T: His-Me finger endonucleases | F: PF21431 | ECOD (1.6) |
B | PF01320 | e6w0vB1 | A: alpha bundles | X: ACP-like | H: Colicin E immunity proteins (From Topology) | T: Colicin E immunity proteins | F: PF01320 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21431 | Colicin/Pyocin-S2, DNase domain (Col-Pyo_DNase) | Colicin/Pyocin-S2, DNase domain | This entry represents the DNAse domain from colicin/pyocin bacteriocins, such as pyocin-S2 from Pseudomonas aeruginosa and colicin E7/E9 from E. coli. This domain has an alpha/beta fold containing a Zn2+ ion binding site [1-5]. | Domain | |
PF01320 | Colicin immunity protein / pyocin immunity protein (Colicin_Pyocin) | Colicin immunity protein / pyocin immunity protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016128 | Pyosin/cloacin translocation domain | Domain | |
IPR036302 | Pyosin/cloacin translocation domain superfamily | Homologous Superfamily | |
IPR037146 | Colicin/pyocin, DNase domain superfamily | Homologous Superfamily | |
IPR003060 | Pyocin S killer protein | Family | |
IPR044925 | His-Me finger superfamily | Homologous Superfamily | |
IPR003615 | HNH nuclease | Domain | |
IPR000290 | Colicin immunity protein/pyocin immunity protein | Family | |
IPR035900 | Colicin E immunity protein superfamily | Homologous Superfamily |