Density-fitted Model Structure of Antibody Variable Domains of TyTx11 in Complex with Typhoid Toxin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth F] | d6vx4f_ | Alpha and beta proteins (a+b) | DNase I-like | DNase I-like | automated matches | automated matches | (Salmonella enterica subsp. enterica serovar Typhi str. CT18 ) [TaxId: 220341 ], | SCOPe (2.08) |
| H [auth G] | d6vx4g_ | Alpha and beta proteins (a+b) | ADP-ribosylation | ADP-ribosylation | automated matches | automated matches | (Salmonella enterica subsp. enterica serovar Typhi str. CT18 ) [TaxId: 220341 ], | SCOPe (2.08) |
| A [auth K] | d6vx4k_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth G] | SCOP2 Family | ADP-ribosylating toxins | 8102604 | 4002404 | SCOP2 (2022-06-29) |
| H [auth G] | SCOP2 Superfamily | ADP-ribosylation | 8102605 | 3001208 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth F] | LRR_1,LRR_8 | e6vx4F1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| H [auth G] | LRR_1,LRR_8 | e6vx4G1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| C [auth H] | LRR_1,LRR_8 | e6vx4H1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| G [auth E] | LRR_1,LRR_8 | e6vx4E1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| F [auth D] | LRR_1,LRR_8 | e6vx4D1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| E [auth B] | LRR_1,LRR_8 | e6vx4B1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| D [auth A] | LRR_1,LRR_8 | e6vx4A1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| B [auth C] | LRR_1,LRR_8 | e6vx4C1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
| A [auth K] | LRR_1,LRR_8 | e6vx4K1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: LRR_1,LRR_8 | ECOD (v295.2) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| C [auth H] | Fab TyTx11, neutralizing | VH-CH1 | Mus musculus (house mouse) | IGHV1-20*02, IGHJ4*01, IGHG1*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202640-0) |
| A [auth K] | Fab TyTx11, neutralizing | V-KAPPA | Mus musculus (house mouse) | IGKV13-85*01, IGKJ2*01 | V-DOMAIN V-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202640-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| C [auth H] | Heavy Chain | IGHV1 | - | cytolethal distending toxin subunit b | pertussis toxin-like subunit arta | SAbDab (2026-10-16) |
| A [auth K] | Light Chain | IGKV13 | Kappa | cytolethal distending toxin subunit b | pertussis toxin-like subunit arta | SAbDab (2026-10-16) |