6VPY | pdb_00006vpy

I33M (I3.2 mutant from CH103 Lineage)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth L]	d6vpyl_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth B]	d6vpyb_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth H]	d6vpyh1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth H]	d6vpyh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth A]	d6vpya1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth A]	d6vpya2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth L]	MCM_N	e6vpyL1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: MCM_N	ECOD (v294.1)
A [auth B]	MCM_N	e6vpyB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: MCM_N	ECOD (v294.1)
C [auth H]	MCM_N	e6vpyH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: MCM_N	ECOD (v294.1)
B [auth A]	MCM_N	e6vpyA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: MCM_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
A [auth B]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
B [auth A]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A [auth B], D [auth L]	Fab I33M, anti-HIV-1,broadly neutralizing	1C-LIKE	Homo sapiens (human)	IGLV3-101, IGLL104, IGLL502, IGLL501, IGLC201, IGLC202, IGLC3*04	V-DOMAIN V-LAMBDA, R-LIKE-DOMAIN J-LIKE, C-DOMAIN C-LAMBDA	IG	FAB-GAMMA-1_LAMBDA	IMGT (202613-0)
B [auth A], C [auth H]	Fab I33M, anti-HIV-1,broadly neutralizing	VH-CH1	Homo sapiens (human)	IGHV4-6108, IGHJ101, IGHG103, IGHG108, IGHG1*06	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_LAMBDA	IMGT (202613-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth B], D [auth L]	Light Chain	IGLV3	Lambda	-	SAbDab (2026-04-10)
B [auth A], C [auth H]	Heavy Chain	IGHV4	-	-	SAbDab (2026-04-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], D [auth L]	I33M light chain	-	response to stimulus immune response immune system process adaptive immune response	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region
B [auth A], C [auth H]	I33M heavy chain	-	response to stimulus immune response immune system process adaptive immune response	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], D [auth L]	IPR003597	Immunoglobulin C1-set	Domain
A [auth B], D [auth L]	IPR050150	Immunoglobulin Variable Light Chain	Family
A [auth B], D [auth L]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth B], D [auth L]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth B], D [auth L]	IPR013106	Immunoglobulin V-set domain	Domain
A [auth B], D [auth L]	IPR003599	Immunoglobulin domain subtype	Domain
A [auth B], D [auth L]	IPR007110	Immunoglobulin-like domain	Domain
A [auth B], D [auth L]	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
B [auth A], C [auth H]	IPR003597	Immunoglobulin C1-set	Domain
B [auth A], C [auth H]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B [auth A], C [auth H]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B [auth A], C [auth H]	IPR013106	Immunoglobulin V-set domain	Domain
B [auth A], C [auth H]	IPR003599	Immunoglobulin domain subtype	Domain
B [auth A], C [auth H]	IPR007110	Immunoglobulin-like domain	Domain
B [auth A], C [auth H]	IPR050380	Immune Recognition and Response Modulators	Family
B [auth A], C [auth H]	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.