6VLF | pdb_00006vlf

Crystal structure of mouse alpha 1,6-fucosyltransferase, FUT8 in its Apo-form

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FUT8_N_cat	e6vlfA01	A: a/b three-layered sandwiches	X: Rossmann-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: FUT8_N_cat	ECOD (v294.1)
A	PSI	e6vlfA02	A: a/b three-layered sandwiches	X: Rossmann-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: PSI	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.287.1060	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	ESAT-6-like	CATH (utative)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
A	1.10.287.1060	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	ESAT-6-like	CATH (utative)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14604	Variant SH3 domain (SH3_9)	Variant SH3 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Alpha-(1,6)-fucosyltransferase	SH3 domain binding protein binding binding protein domain specific binding glycosyltransferase activity transferase activity catalytic activity fucosyltransferase activity hexosyltransferase activity alpha-(1->6)-fucosyltransferase activity glycoprotein 6-alpha-L-fucosyltransferase activity catalytic activity, acting on a protein catalytic activity, acting on a glycoprotein	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process receptor metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process receptor metabolic process nucleoside phosphate metabolic process nucleotide-sugar metabolic process GDP-L-fucose metabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression regulation of gene expression regulation of macromolecule biosynthetic process regulation of metabolic process multicellular organismal process respiratory gaseous exchange by respiratory system cellular response to stimulus integrin-mediated signaling pathway cell surface receptor signaling pathway response to stimulus signaling cell communication signal transduction N-glycan processing cellular response to oxidative stress regulation of cellular response to stress cellular response to chemical stress regulation of cellular response to oxidative stress response to oxidative stress cellular response to chemical stimulus cellular response to stress regulation of response to stimulus response to stress regulation of response to stress response to chemical regulation of response to oxidative stress cell migration cell motility cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway enzyme-linked receptor protein signaling pathway	membrane-bounded organelle intracellular anatomical structure Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment membrane Golgi cisterna intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack membrane-bounded organelle intracellular anatomical structure Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment membrane Golgi cisterna intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR027350	Glycosyltransferase family 23 (GT23) domain	Domain
A, B	IPR015827	Alpha-(1,6)-fucosyltransferase	Family
A, B	IPR045573	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Domain
A, B	IPR035653	Alpha-(1,6)-fucosyltransferase, SH3 domain	Domain
A, B	IPR001452	SH3 domain	Domain
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.