6VCF

Crystal structure of Nitrosotalea devanaterra carotenoid cleavage dioxygenase, iron form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2021-05-27)
B	SCOP2 Family	Retinoid isomerase RPE65-like	8096329	4007172	SCOP2 (2021-05-27)
B	SCOP2 Superfamily	RPE65-like	8096330	3002594	SCOP2 (2021-05-27)
C	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03055	e6vcfA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF03055	ECOD (1.6)
B	PF03055	e6vcfB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF03055	ECOD (1.6)
C	PF03055	e6vcfC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF03055	ECOD (1.6)
D	PF03055	e6vcfD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF03055	ECOD (1.6)
E	PF03055	e6vcfE1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF03055	ECOD (1.6)
F	PF03055	e6vcfF1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF03055	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03055	Retinal pigment epithelial membrane protein (RPE65)	Retinal pigment epithelial membrane protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	carotenoid cleavage dioxygenase	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity beta-carotene 15,15'-dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity carotenoid dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process cellular metabolic process terpene metabolic process primary metabolic process cellular lipid catabolic process hydrocarbon metabolic process carotene metabolic process cellular catabolic process cellular lipid metabolic process metabolic process isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process cellular metabolic process terpene metabolic process primary metabolic process cellular lipid catabolic process hydrocarbon metabolic process carotene metabolic process cellular catabolic process cellular lipid metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process diterpenoid metabolic process retinal metabolic process cellular aldehyde metabolic process retinoid metabolic process olefinic compound metabolic process terpenoid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR004294	Carotenoid oxygenase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.