6V8Z | pdb_00006v8z

VRC03 and 10-1074 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
C [auth D]d6v8zd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth D]d6v8zd2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth J]d6v8zj1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth J]d6v8zj2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
O [auth P]d6v8zp1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
O [auth P]d6v8zp2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth E]d6v8ze2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth E]d6v8ze1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
J [auth K]d6v8zk2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
J [auth K]d6v8zk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
P [auth Q]d6v8zq2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
P [auth Q]d6v8zq1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth C]d6v8zc_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth I]d6v8zi_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Q [auth O]d6v8zo_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6v8zf1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6v8zl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd6v8zr1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
GSCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
MSCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyVirus ectodomain 8085620 3001628 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyVirus ectodomain 8085620 3001628 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyVirus ectodomain 8085620 3001628 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACytochrome_C554e6v8zA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
GCytochrome_C554e6v8zG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
MCytochrome_C554e6v8zM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
BCytochrome_C554e6v8zB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
HCytochrome_C554e6v8zH1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
NCytochrome_C554e6v8zN1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
C [auth D]Cytochrome_C554e6v8zD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
I [auth J]Cytochrome_C554e6v8zJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
O [auth P]Cytochrome_C554e6v8zP1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
D [auth E]Cytochrome_C554e6v8zE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
J [auth K]Cytochrome_C554e6v8zK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
P [auth Q]Cytochrome_C554e6v8zQ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
E [auth C]Cytochrome_C554e6v8zC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
K [auth I]Cytochrome_C554e6v8zI1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
Q [auth O]Cytochrome_C554e6v8zO1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
FCytochrome_C554e6v8zF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
LCytochrome_C554e6v8zL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)
RCytochrome_C554e6v8zR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Cytochrome_C554ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C [auth D],
I [auth J],
O [auth P]
Fab 10-1074 VH-CH1 Homo sapiens (human) IGHV4-59*01, IGHV4-59*08, IGHV4-59*13, IGHJ6*04, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202614-0)
D [auth E],
J [auth K],
P [auth Q]
Fab 10-1074 L-LAMBDA Homo sapiens (human) IGLV3-21*01, IGLV3-21*04, IGLJ2*01, IGLJ7*01, IGLJ3*01, IGLC2*01, IGLC2*02, IGLC3*04 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202614-0)
E [auth C],
K [auth I],
Q [auth O]
Fab VRC03 VH-CH1 Homo sapiens (human) IGHV1-2*02, IGHV1-46*04, IGHV1-2*07, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHJ6*04, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202614-0)
F, L, R
Fab VRC03 L-KAPPA Homo sapiens (human) IGKV3-20*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202614-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth D],
I [auth J],
O [auth P]
Heavy ChainIGHV4 -envelope glycoprotein gp120SAbDab (2026-04-17)
F, L, R
Light ChainIGKV3 Kappaenvelope glycoprotein gp120SAbDab (2026-04-17)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
C [auth D],
I [auth J],
O [auth P]
Zinlirvimab HIV-1 gp120 V3Therapeutic SAbDab (2026-04-17)
D [auth E],
J [auth K],
P [auth Q]
Zinlirvimab HIV-1 gp120 V3Therapeutic SAbDab (2026-04-17)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, G, M
Envelope glycoprotein gp120
B, H, N
envelope glycoprotein gp41
C [auth D],
I [auth J],
O [auth P]
10-1074 Fab Heavy Chain-
D [auth E],
J [auth K],
P [auth Q]
10-1074 Fab Light Chain-
E [auth C],
K [auth I],
Q [auth O]
VRC03 Fab Heavy Chain-
F, L, R
VRC03 Fab Light Chain-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, G, M
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
A, G, M
IPR036377Gp120 core superfamilyHomologous Superfamily
A, G, M
IPR000328Retroviral envelope protein GP41-likeDomain
A, G, M
IPR037527Envelope glycoprotein Gp160Family
B, H, N
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
B, H, N
IPR036377Gp120 core superfamilyHomologous Superfamily
B, H, N
IPR000328Retroviral envelope protein GP41-likeDomain
B, H, N
IPR037527Envelope glycoprotein Gp160Family
C [auth D],
I [auth J],
O [auth P]
IPR003597Immunoglobulin C1-setDomain
C [auth D],
I [auth J],
O [auth P]
IPR013783Immunoglobulin-like foldHomologous Superfamily
C [auth D],
I [auth J],
O [auth P]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth D],
I [auth J],
O [auth P]
IPR013106Immunoglobulin V-set domainDomain
C [auth D],
I [auth J],
O [auth P]
IPR003599Immunoglobulin domain subtypeDomain
C [auth D],
I [auth J],
O [auth P]
IPR007110Immunoglobulin-like domainDomain
C [auth D],
I [auth J],
O [auth P]
IPR050380Immune Recognition and Response ModulatorsFamily
C [auth D],
I [auth J],
O [auth P]
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
D [auth E],
J [auth K],
P [auth Q]
IPR003597Immunoglobulin C1-setDomain
D [auth E],
J [auth K],
P [auth Q]
IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth E],
J [auth K],
P [auth Q]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth E],
J [auth K],
P [auth Q]
IPR013106Immunoglobulin V-set domainDomain
D [auth E],
J [auth K],
P [auth Q]
IPR003599Immunoglobulin domain subtypeDomain
D [auth E],
J [auth K],
P [auth Q]
IPR007110Immunoglobulin-like domainDomain
D [auth E],
J [auth K],
P [auth Q]
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
D [auth E],
J [auth K],
P [auth Q]
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
E [auth C],
K [auth I],
Q [auth O]
IPR003597Immunoglobulin C1-setDomain
E [auth C],
K [auth I],
Q [auth O]
IPR013783Immunoglobulin-like foldHomologous Superfamily
E [auth C],
K [auth I],
Q [auth O]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E [auth C],
K [auth I],
Q [auth O]
IPR013106Immunoglobulin V-set domainDomain
E [auth C],
K [auth I],
Q [auth O]
IPR003599Immunoglobulin domain subtypeDomain
E [auth C],
K [auth I],
Q [auth O]
IPR007110Immunoglobulin-like domainDomain
E [auth C],
K [auth I],
Q [auth O]
IPR050380Immune Recognition and Response ModulatorsFamily
E [auth C],
K [auth I],
Q [auth O]
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
F, L, R
IPR003597Immunoglobulin C1-setDomain
F, L, R
IPR050150Immunoglobulin Variable Light ChainFamily
F, L, R
IPR013783Immunoglobulin-like foldHomologous Superfamily
F, L, R
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
F, L, R
IPR013106Immunoglobulin V-set domainDomain
F, L, R
IPR003599Immunoglobulin domain subtypeDomain
F, L, R
IPR007110Immunoglobulin-like domainDomain
F, L, R
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site