Annotations: 6V85

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00946	e6v85A4	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: PF00946	ECOD (1.6)
A	F_UNCLASSIFIED	e6v85A6	A: alpha bundles	X: Vesicular stomatitis virus L polymerase connector domain (From Topology)	H: Vesicular stomatitis virus L polymerase connector domain (From Topology)	T: Vesicular stomatitis virus L polymerase connector domain	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF00946,PF14318	e6v85A2	A: alpha complex topology	X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: PF00946,PF14318	ECOD (1.6)
A	PF00946	e6v85A5	A: alpha complex topology	X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology)	H: N-terminal additional helical subdomain in reovirus polymerase lambda3	T: N-terminal domain in vesicular stomatitis virus RNA polymerase L	F: PF00946	ECOD (1.6)
A	PF00946	e6v85A1	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: PF00946	ECOD (1.6)
A	F_UNCLASSIFIED	e6v85A3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth F]	F_UNCLASSIFIED	e6v85F1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: Phosphoprotein XD domain (From Topology)	T: Phosphoprotein XD domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF14318	Mononegavirales mRNA-capping region V (Mononeg_mRNAcap)	Mononegavirales mRNA-capping region V	This V domain of L RNA-polymerase carries a new motif, GxxTx(n)HR, that is essential for mRNA cap formation. Nonsegmented negative-sense (NNS) RNA viruses, Mononegavirales, cap their mRNA by an unconventional mechanism. Specifically, 5'-monophosphate ...	This V domain of L RNA-polymerase carries a new motif, GxxTx(n)HR, that is essential for mRNA cap formation. Nonsegmented negative-sense (NNS) RNA viruses, Mononegavirales, cap their mRNA by an unconventional mechanism. Specifically, 5'-monophosphate mRNA is transferred to GDP derived from GTP through a reaction that involves a covalent intermediate between the large polymerase protein L and mRNA. The V region is essential for this process [1].	Domain
A	PF00946	Mononegavirales RNA dependent RNA polymerase (Mononeg_RNA_pol)	Mononegavirales RNA dependent RNA polymerase	-	Family
B [auth F], C [auth B], D [auth C], E [auth D], F [auth E]	PF03210	Paramyxovirus P/V phosphoprotein C-terminal (Paramyx_P_V_C)	Paramyxovirus P/V phosphoprotein C-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	RNA-directed RNA polymerase L	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA methyltransferase activity transferase activity, transferring one-carbon groups S-adenosylmethionine-dependent methyltransferase activity mRNA 5'-cap (guanine-N7-)-methyltransferase activity N-methyltransferase activity methyltransferase activity mRNA methyltransferase activity pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides	-	virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
B [auth F], C [auth B], D [auth C], E [auth D], F [auth E]	Phosphoprotein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR014023	Mononegavirales RNA-directed RNA polymerase catalytic domain	Domain
A	IPR025786	Mononegavirus L protein 2-O-ribose methyltransferase	Domain
A	IPR039736	RNA-directed RNA polymerase L, C-terminal	Domain
A	IPR026890	Mononegavirales mRNA-capping domain V	Domain
A	IPR016269	RNA-directed RNA polymerase, paramyxovirus	Family
B [auth F], C [auth B], D [auth C], E [auth D], F [auth E]	IPR025909	Phosphoprotein P soyouz module	Domain
B [auth F], C [auth B], D [auth C], E [auth D], F [auth E]	IPR004897	P/V phosphoprotein, paramyxoviral	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.