6V3E | pdb_00006v3e

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8094677 3001397 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8097300 3001473 SCOP2B (2022-06-29)
F [auth f]SCOP2 FamilyRibosomal protein S6 8097301 4001337 SCOP2 (2022-06-29)
F [auth f]SCOP2 SuperfamilyRibosomal protein S6 8097302 3001323 SCOP2 (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S8 8095511 3000709 SCOP2B (2022-06-29)
I [auth i]SCOP2 FamilyTranslational machinery components 8095448 4000951 SCOP2 (2022-06-29)
I [auth i]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like 8095449 3000100 SCOP2 (2022-06-29)
L [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8094567 3000135 SCOP2B (2022-06-29)
N [auth n]SCOP2 FamilyRibosomal protein S14p/S29e 8094091 4003647 SCOP2 (2022-06-29)
N [auth n]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8094092 3000068 SCOP2 (2022-06-29)
O [auth o]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S13 8094031 4000767 SCOP2 (2022-06-29)
O [auth o]SCOP2 SuperfamilyS15/NS1 RNA-binding domain 8094032 3001284 SCOP2 (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S16 8095491 3000680 SCOP2B (2022-06-29)
Q [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8095099 3000135 SCOP2B (2022-06-29)
S [auth s]SCOP2 FamilyRibosomal protein S19 8094762 4001081 SCOP2 (2022-06-29)
S [auth s]SCOP2 SuperfamilyRibosomal protein S19 8094763 3000686 SCOP2 (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S7 8095221 3000799 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8094108 3000053 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth b]e6v3eb1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
C [auth c]e6v3ec1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
D [auth d]e6v3ed1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
E [auth e]e6v3ee1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
F [auth f]e6v3ef1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
H [auth h]e6v3eh1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
I [auth i]e6v3ei1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
J [auth j]e6v3ej1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
K [auth k]e6v3ek1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
L [auth l]e6v3el1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
N [auth n]e6v3en1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
O [auth o]e6v3eo1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
P [auth p]e6v3ep1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
Q [auth q]e6v3eq1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
R [auth r]e6v3er1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
S [auth s]e6v3es1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
T [auth t]e6v3et1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
G [auth g]e6v3eg1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)
M [auth m]e6v3em1 A: UBC-likeX: UBC-likeH: UBC-likeT: BREF:ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth sN1]16s Ribosomal RNA---
B [auth b]30S ribosomal protein S2
C [auth c]30S ribosomal protein S3
D [auth d]30S ribosomal protein S4
E [auth e]30S ribosomal protein S5
F [auth f]30S ribosomal protein S6
H [auth h]30S ribosomal protein S8
I [auth i]30S ribosomal protein S9
J [auth j]30S ribosomal protein S10---
K [auth k]30S ribosomal protein S11---
L [auth l]30S ribosomal protein S12
N [auth n]30S ribosomal protein S14
O [auth o]30S ribosomal protein S15
P [auth p]30S ribosomal protein S16
Q [auth q]30S ribosomal protein S17
R [auth r]30S ribosomal protein S18
S [auth s]30S ribosomal protein S19
T [auth t]30S ribosomal protein S20
G [auth g]30S ribosomal protein S7
M [auth m]30S ribosomal protein S13

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR057258Small ribosomal subunit protein uS3Family
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily