Cryo-EM structure of mammalian Ric-8A:Galpha(i):nanobody complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | V-set_12 | e6uktF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
| E | V-set_1 | e6uktE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_1 | ECOD (1.6) |
| D | V-set_12 | e6uktD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
| C | V-set_8 | e6uktC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| B | G-alpha | e6uktB2 | A: alpha arrays | X: Transducin (alpha subunit), insertion domain (From Topology) | H: Transducin (alpha subunit), insertion domain (From Topology) | T: Transducin (alpha subunit), insertion domain | F: G-alpha | ECOD (1.6) |
| B | Ras | e6uktB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| Heavy Chain | IGHV1 | - | guanine nucleotide-binding protein g(i) subunit alpha-1 | SAbDab (2025-12-05) | |
| Heavy Chain | IGHV1 | - | resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) | SAbDab (2025-12-05) | |
| Heavy Chain | IGHV1 | - | resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) | SAbDab (2025-12-05) | |
| Heavy Chain | IGHV1 | - | resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) | SAbDab (2025-12-05) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF10165 | Guanine nucleotide exchange factor synembryn (Ric8) | Guanine nucleotide exchange factor synembryn | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001019 | Guanine nucleotide binding protein (G-protein), alpha subunit | Family | |
| IPR011025 | G protein alpha subunit, helical insertion | Homologous Superfamily | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR001408 | G-protein alpha subunit, group I | Family | |
| IPR016024 | Armadillo-type fold | Homologous Superfamily | |
| IPR008376 | Chaperone Ric-8 A/B | Domain | |
| IPR019318 | Guanine nucleotide exchange factor, Ric8 | Family | |
| IPR011989 | Armadillo-like helical | Homologous Superfamily |














