6UKT | pdb_00006ukt

Cryo-EM structure of mammalian Ric-8A:Galpha(i):nanobody complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRas-like P-loop GTPases 8019719 3002022 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGalpha insert domain-like 8056777 3000669 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FV-set_12e6uktF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
EV-set_1e6uktE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_1ECOD (1.6)
DV-set_12e6uktD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
CV-set_8e6uktC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
BG-alphae6uktB2 A: alpha arraysX: Transducin (alpha subunit), insertion domain (From Topology)H: Transducin (alpha subunit), insertion domain (From Topology)T: Transducin (alpha subunit), insertion domainF: G-alphaECOD (1.6)
BRase6uktB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.25.10.10 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Leucine-rich Repeat VariantCATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Heavy ChainIGHV1 -guanine nucleotide-binding protein g(i) subunit alpha-1SAbDab (2025-12-05)
Heavy ChainIGHV1 -resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) SAbDab (2025-12-05)
Heavy ChainIGHV1 -resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) SAbDab (2025-12-05)
Heavy ChainIGHV1 -resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) SAbDab (2025-12-05)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10165Guanine nucleotide exchange factor synembryn (Ric8)Guanine nucleotide exchange factor synembryn- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NB9156---
NB8119---
NB8117---
NB8109---
Guanine nucleotide-binding protein G(i) subunit alpha-1
Resistance to inhibitors of cholinesterase 8 homolog A (C. elegans)

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046
TPO Parent Component: THR

RESIDAA0037 , AA0038

PSI-MOD :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047