6UD8

GluA2 in complex with its auxiliary subunit CNIH3 - with antagonist ZK200775

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00060e6ud8A1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
APF10613e6ud8A2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
BPF00060e6ud8B1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
BPF10613e6ud8B2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
E [auth C]PF00060e6ud8C2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
E [auth C]PF10613e6ud8C1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
F [auth D]PF00060e6ud8D1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
F [auth D]PF10613e6ud8D2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
E [auth C],
F [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
B,
E [auth C],
F [auth D]		PF00497Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3)Bacterial extracellular solute-binding proteins, family 3This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Th ...This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. This domain recognises Nicotinate, quidalnate, pyridine-2,5-dicarboxylate and salicylate [1].
Domain
A,
B,
E [auth C],
F [auth D]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
C [auth E],
D [auth F],
G,
H		PF03311Cornichon protein (Cornichon)Cornichon protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B,
E [auth C],
F [auth D]		Glutamate receptor 2
C [auth E],
D [auth F],
G,
H		Protein cornichon homolog 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B,
E [auth C],
F [auth D]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
A,
B,
E [auth C],
F [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
B,
E [auth C],
F [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
B,
E [auth C],
F [auth D]		IPR001828Receptor, ligand binding regionDomain
A,
B,
E [auth C],
F [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
B,
E [auth C],
F [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
B,
E [auth C],
F [auth D]		IPR015683Ionotropic glutamate receptorFamily
C [auth E],
D [auth F],
G,
H		IPR033466Cornichon, conserved siteConserved Site
C [auth E],
D [auth F],
G,
H		IPR003377CornichonFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluA2 Glutamate receptor (AMPA-subtype) in complex with cornichon homolog and antagonist ZK200775