6U3V | pdb_00006u3v

Crystal structure of human alpha/epsilon-COP of the COPI vesicular coat bound to alpha-COP STM1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	TPR-like	8098106	3001345	SCOP2B (2022-06-29)
A	SCOP2 Family	Coatomer epsilon subunit-like	8098105	4005048	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TPR-like	8098106	3001345	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	zf-CCCH_8	e6u3vD1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: zf-CCCH_8	ECOD (develop294)
B	Dyp_perox_N	e6u3vB1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Dyp_perox_N	ECOD (develop294)
C	zf-CCCH_8	e6u3vC1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: zf-CCCH_8	ECOD (develop294)
A	zf-CCCH_8	e6u3vA1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: zf-CCCH_8	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (utative)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Coatomer subunit alpha	RNA binding binding nucleic acid binding mRNA binding hormone activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity structural molecule activity	localization protein localization to cell leading edge macromolecule localization intracellular protein localization protein localization to axon cellular localization transport establishment of localization in cell intracellular transport cellular process endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization Golgi vesicle transport vesicle-mediated transport localization protein localization to cell leading edge macromolecule localization intracellular protein localization protein localization to axon cellular localization transport establishment of localization in cell intracellular transport cellular process endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport establishment of protein localization protein transport intracellular protein transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum multicellular organismal process regulation of body fluid levels system process secretion by tissue pancreatic juice secretion digestive system process secretion biological regulation body fluid secretion digestion regulation of biological quality	cellular anatomical structure membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle bounding membrane of organelle vesicle membrane cellular anatomical structure membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat Golgi apparatus coated membrane intracellular membrane-bounded organelle COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane cytoplasm organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cytosol transport vesicle growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane Golgi membrane
A, C	Coatomer subunit epsilon	structural molecule activity	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum establishment of protein localization protein transport macromolecule localization intracellular protein localization protein localization to axon cellular localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum establishment of protein localization protein transport macromolecule localization intracellular protein localization protein localization to axon cellular localization establishment of localization in cell intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system protein-containing complex vesicle coat intracellular vesicle membrane protein complex COPI-coated vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system protein-containing complex vesicle coat intracellular vesicle membrane protein complex COPI-coated vesicle membrane coat bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat membrane coated membrane COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane Golgi membrane cytosol transport vesicle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR019775	WD40 repeat, conserved site	Conserved Site
B, D	IPR016391	Coatomer subunit alpha	Family
B, D	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
B, D	IPR010714	Coatomer, alpha subunit, C-terminal	Domain
B, D	IPR006692	COPA/B, second beta-propeller domain	Domain
B, D	IPR047312	Coatomer subunit alpha, WD Associated Region	Domain
B, D	IPR011048	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily	Homologous Superfamily
B, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B, D	IPR056176	COPA/B, TPR domain	Domain
B, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B, D	IPR050844	Coatomer complex subunit	Family
B, D	IPR001680	WD40 repeat	Repeat
A, C	IPR006822	Coatomer, epsilon subunit	Family
A, C	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: P53621	autoimmune interstitial lung disease-arthritis syndrome interstitial lung disease arthritic joint disease autoimmune disease oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Polyarthritis adenoma atypical teratoid rhabdoid tumor breast cancer Gaucher disease invasive ductal breast carcinoma malignant ependymoma myopathy osteosarcoma autoimmune interstitial lung disease-arthritis syndrome interstitial lung disease arthritic joint disease autoimmune disease oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Polyarthritis adenoma atypical teratoid rhabdoid tumor breast cancer Gaucher disease invasive ductal breast carcinoma malignant ependymoma myopathy osteosarcoma plasma cell myeloma psoriasis breast carcinoma glioblastoma large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma ovarian cancer astrocytic tumor diabetes mellitus lung adenocarcinoma medulloblastoma
A, C	Pharos: O14579	diabetes mellitus osteosarcoma plasma cell myeloma lung adenocarcinoma ovarian cancer rheumatoid arthritis malignant ependymoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.