6TYL
Crystal structure of mammalian Ric-8A:Galpha(i):nanobody complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H [auth B] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019719 | 3002022 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8019719 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | V-set_8 | e6tylC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth H] | V-set_8 | e6tylH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth E] | V-set_1 | e6tylE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_1 | ECOD (1.6) |
E [auth J] | V-set_1 | e6tylJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_1 | ECOD (1.6) |
F [auth D] | V-set_12 | e6tylD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
G [auth I] | V-set_12 | e6tylI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
H [auth B] | Ras | e6tylB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
I [auth G] | Ras | e6tylG1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C], C [auth H] | Heavy Chain | IGHV1 | - | resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) | SAbDab (2024-04-19) |
D [auth E], E [auth J] | Heavy Chain | IGHV1 | - | resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) | SAbDab (2024-04-19) |
F [auth D], G [auth I] | Heavy Chain | IGHV1 | - | resistance to inhibitors of cholinesterase 8 homolog a (c.elegans) | SAbDab (2024-04-19) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, J [auth F] | PF10165 | Guanine nucleotide exchange factor synembryn (Ric8) | Guanine nucleotide exchange factor synembryn | - | Family |
H [auth B], I [auth G] | PF00503 | G-protein alpha subunit (G-alpha) | G-protein alpha subunit | G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, J [auth F] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
A, J [auth F] | IPR008376 | Synembryn | Domain |
A, J [auth F] | IPR019318 | Guanine nucleotide exchange factor, Ric8 | Family |
A, J [auth F] | IPR011989 | Armadillo-like helical | Homologous Superfamily |
H [auth B], I [auth G] | IPR001019 | Guanine nucleotide binding protein (G-protein), alpha subunit | Family |
H [auth B], I [auth G] | IPR011025 | G protein alpha subunit, helical insertion | Homologous Superfamily |
H [auth B], I [auth G] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
H [auth B], I [auth G] | IPR001408 | G-protein alpha subunit, group I | Family |