Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| U [auth k] | SCOP2B Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
| I [auth K] | SCOP2B Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
| GA [auth 9] | SCOP2B Superfamily | Photosystem I reaction center subunit X, PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
| T [auth j] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
| H [auth J] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
| FA [auth 8] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
| S [auth i] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
| G [auth I] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
| EA [auth 7] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
| R [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
| DA [auth 6] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
| Q [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
| CA [auth 5] | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
| P [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
| BA [auth 4] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
| O [auth c] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
| AA [auth 3] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
| Z [auth 2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
| N [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
| X [auth x] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
| L [auth X] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
| JA [auth z] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
| W [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
| K [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
| IA [auth y] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
| V [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
| J [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
| HA [auth 0] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
| Y [auth 1] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
| M [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| U [auth k] | e6trck1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| I [auth K] | e6trcK1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| GA [auth 9] | e6trc91 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| T [auth j] | e6trcj1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| H [auth J] | e6trcJ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| FA [auth 8] | e6trc81 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| S [auth i] | e6trci1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| G [auth I] | e6trcI1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| EA [auth 7] | e6trc71 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| R [auth f] | e6trcf1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| F | e6trcF1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| DA [auth 6] | e6trc61 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| Q [auth e] | e6trce1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| E | e6trcE1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| CA [auth 5] | e6trc51 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| P [auth d] | e6trcd1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| D | e6trcD1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| BA [auth 4] | e6trc41 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| O [auth c] | e6trcc1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| C | e6trcC1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| AA [auth 3] | e6trc31 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| Z [auth 2] | e6trc21 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| N [auth b] | e6trcb1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| B | e6trcB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| X [auth x] | e6trcx1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| L [auth X] | e6trcX1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| JA [auth z] | e6trcz1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| W [auth m] | e6trcm1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| K [auth M] | e6trcM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| IA [auth y] | e6trcy1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| V [auth l] | e6trcl1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| J [auth L] | e6trcL1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| HA [auth 0] | e6trc01 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| Y [auth 1] | e6trc11 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| M [auth a] | e6trca1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) | |
| A | e6trcA1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| V [auth l] | 1.20.1240.10 | Mainly Alpha | Up-down Bundle | Photosystem 1 Reaction Centre Subunit Xi | Chain: L | CATH (utative) |
| J [auth L] | 1.20.1240.10 | Mainly Alpha | Up-down Bundle | Photosystem 1 Reaction Centre Subunit Xi | Chain: L | CATH (utative) |
| HA [auth 0] | 1.20.1240.10 | Mainly Alpha | Up-down Bundle | Photosystem 1 Reaction Centre Subunit Xi | Chain: L | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| GA [auth 9], I [auth K], U [auth k] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
| FA [auth 8], H [auth J], T [auth j] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
| EA [auth 7], G [auth I], S [auth i] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
| DA [auth 6], F, R [auth f] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
| CA [auth 5], E, Q [auth e] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
| BA [auth 4], D, P [auth d] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
| AA [auth 3], C, O [auth c] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| B, N [auth b], Z [auth 2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
| IA [auth y], K [auth M], W [auth m] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
| HA [auth 0], J [auth L], V [auth l] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
| A, M [auth a], Y [auth 1] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| FA [auth 8], H [auth J], T [auth j] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| EA [auth 7], G [auth I], S [auth i] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |














