6TMH | pdb_00006tmh

Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, OSCP/F1/c-ring model


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
C [auth E]d6tmhe3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
C [auth E]d6tmhe1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
C [auth E]d6tmhe2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
D [auth C]d6tmhc3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
D [auth C]d6tmhc1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
D [auth C]d6tmhc2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
B [auth A]d6tmha3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
B [auth A]d6tmha1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
B [auth A]d6tmha2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
Fd6tmhf3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
Fd6tmhf1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
Fd6tmhf2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
G [auth D]d6tmhd3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
G [auth D]d6tmhd1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
G [auth D]d6tmhd2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
E [auth B]d6tmhb3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
E [auth B]d6tmhb1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
E [auth B]d6tmhb2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)
H [auth g]d6tmhg_ Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like ATP synthase (F1-ATPase), gamma subunit automated matches automated matches (Toxoplasma gondii GT1 ) [TaxId: 507601 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth g]SCOP2B SuperfamilyATP synthase gamma subunit-like 8101910 3000451 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth E]ATP-synt_ab_Ne6tmhE3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
C [auth E]ATP-synt_ab_Ce6tmhE1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
C [auth E]ATP-synt_abe6tmhE2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
D [auth C]ATP-synt_ab_Ne6tmhC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
D [auth C]ATP-synt_ab_Ce6tmhC2 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
D [auth C]ATP-synt_abe6tmhC3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
B [auth A]ATP-synt_ab_Ne6tmhA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
B [auth A]ATP-synt_ab_Ce6tmhA3 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
B [auth A]ATP-synt_abe6tmhA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
FATP-synt_ab_Ne6tmhF3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
FATP-synt_ab_Ce6tmhF1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
FATP-synt_abe6tmhF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
G [auth D]ATP-synt_ab_Ne6tmhD3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
G [auth D]ATP-synt_ab_Ce6tmhD1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
G [auth D]ATP-synt_abe6tmhD2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
E [auth B]ATP-synt_ab_Ne6tmhB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
E [auth B]ATP-synt_ab_Ce6tmhB3 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
E [auth B]ATP-synt_abe6tmhB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
H [auth g]ATP-synte6tmhg1 A: a/b three-layered sandwichesX: ATP synthase (F1-ATPase), gamma subunit (From Topology)H: ATP synthase (F1-ATPase), gamma subunit (From Topology)T: ATP synthase (F1-ATPase), gamma subunitF: ATP-syntECOD (1.6)
I [auth d]ATP-synt_DE_Ne6tmhd2 A: beta sandwichesX: Epsilon subunit of F1F0-ATP synthase-NH: Epsilon subunit of F1F0-ATP synthase-N (From Topology)T: Epsilon subunit of F1F0-ATP synthase-NF: ATP-synt_DE_NECOD (1.6)
I [auth d]F_UNCLASSIFIEDe6tmhd1 A: alpha bundlesX: Long alpha-hairpinH: Epsilon subunit of F1F0-ATP synthase C-terminal domain (From Topology)T: Epsilon subunit of F1F0-ATP synthase C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
J [auth e]ATP-synt_Epse6tmhe1 A: extended segmentsX: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)H: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)T: Epsilon subunit of mitochondrial F1F0-ATP synthaseF: ATP-synt_EpsECOD (1.6)
K [auth G]OSCPe6tmhG1 A: alpha bundlesX: ATPD N-terminal domain-likeH: N-terminal domain of the delta subunit of the F1F0-ATP synthase (From Topology)T: N-terminal domain of the delta subunit of the F1F0-ATP synthaseF: OSCPECOD (1.6)
L [auth H]ATP-synt_Ce6tmhH1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
M [auth I]ATP-synt_Ce6tmhI1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
O [auth K]ATP-synt_Ce6tmhK1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
P [auth L]ATP-synt_Ce6tmhL1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
R [auth N]ATP-synt_Ce6tmhN1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
S [auth O]ATP-synt_Ce6tmhO1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
U [auth Q]ATP-synt_Ce6tmhQ1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
T [auth P]ATP-synt_Ce6tmhP1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
Q [auth M]ATP-synt_Ce6tmhM1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
N [auth J]ATP-synt_Ce6tmhJ1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth i]Inhibitor of F1- - -
B [auth A],
C [auth E],
D [auth C]
ATP synthase subunit alpha,subunit alpha -
E [auth B],
F,
G [auth D]
ATP synthase subunit beta
H [auth g]ATP synthase subunit gamma -
I [auth d]ATP synthase subunit delta -
J [auth e]ATP synthase subunit epsilon
K [auth G]Oligomycin sensitivity conferring protein (OSCP) -
subunit c

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A],
C [auth E],
D [auth C]
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
B [auth A],
C [auth E],
D [auth C]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
B [auth A],
C [auth E],
D [auth C]
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
B [auth A],
C [auth E],
D [auth C]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
B [auth A],
C [auth E],
D [auth C]
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
B [auth A],
C [auth E],
D [auth C]
IPR000793ATP synthase, alpha subunit, C-terminalDomain
B [auth A],
C [auth E],
D [auth C]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
B [auth A],
C [auth E],
D [auth C]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
B [auth A],
C [auth E],
D [auth C]
IPR005294ATP synthase, F1 complex, alpha subunitFamily
B [auth A],
C [auth E],
D [auth C]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth B],
F,
G [auth D]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
E [auth B],
F,
G [auth D]
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
E [auth B],
F,
G [auth D]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
E [auth B],
F,
G [auth D]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
E [auth B],
F,
G [auth D]
IPR050053ATPase alpha/beta chainsFamily
E [auth B],
F,
G [auth D]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
E [auth B],
F,
G [auth D]
IPR055190ATP synthase A/B type, C-terminal domainDomain
E [auth B],
F,
G [auth D]
IPR003593AAA+ ATPase domainDomain
E [auth B],
F,
G [auth D]
IPR005722ATP synthase, F1 complex, beta subunitFamily
E [auth B],
F,
G [auth D]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth g]IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
H [auth g]IPR000131ATP synthase, F1 complex, gamma subunitFamily
H [auth g]IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
I [auth d]IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
I [auth d]IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
I [auth d]IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
J [auth e]IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
J [auth e]IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
K [auth G]IPR000711ATPase, OSCP/delta subunitFamily
K [auth G]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain