6SXN | pdb_00006sxn

Crystal structure of P212121 apo form of CrtE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6sxnf_	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Picosynechococcus sp. PCC 7002 ) [TaxId: 32049 ],	SCOPe (2.08)
D	d6sxnd_	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Picosynechococcus sp. PCC 7002 ) [TaxId: 32049 ],	SCOPe (2.08)
C	d6sxnc_	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Picosynechococcus sp. PCC 7002 ) [TaxId: 32049 ],	SCOPe (2.08)
B	d6sxnb_	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Picosynechococcus sp. PCC 7002 ) [TaxId: 32049 ],	SCOPe (2.08)
A	d6sxna1	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Picosynechococcus sp. PCC 7002 ) [TaxId: 32049 ],	SCOPe (2.08)
A	d6sxna2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Picosynechococcus sp. PCC 7002 ) [TaxId: 32049 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Terpenoid synthases	8097230	3001615	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Terpenoid synthases	8097230	3001615	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Terpenoid synthases	8097230	3001615	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Terpenoid synthases	8097230	3001615	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Terpenoid synthases	8097230	3001615	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Terpenoid synthases	8097230	3001615	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Beta-lactamase	e6sxnF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
E	Beta-lactamase	e6sxnE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
D	Beta-lactamase	e6sxnD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
C	Beta-lactamase	e6sxnC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
B	Beta-lactamase	e6sxnB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
A	Beta-lactamase	e6sxnA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)
E	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)
D	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)
C	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Source
F	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase	Domain
E	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase	Domain
D	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase	Domain
C	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase	Domain
B	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase	Domain
A	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F	Geranylgeranyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity geranylgeranyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
E	Geranylgeranyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity geranylgeranyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
D	Geranylgeranyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity geranylgeranyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
C	Geranylgeranyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity geranylgeranyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
B	Geranylgeranyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity geranylgeranyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
A	Geranylgeranyl pyrophosphate synthase	prenyl diphosphate synthase activity dimethylallyltranstransferase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity geranylgeranyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process biosynthetic process farnesyl diphosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process geranyl diphosphate biosynthetic process geranyl diphosphate metabolic process geranylgeranyl diphosphate biosynthetic process geranylgeranyl diphosphate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F	IPR053378	Prenyl diphosphate synthase	Family
F	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
F	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
F	IPR000092	Polyprenyl synthetase-like	Family
F	IPR054848	Geranylgeranyl pyrophosphate synthase CRTE-like	Family
E	IPR053378	Prenyl diphosphate synthase	Family
E	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
E	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
E	IPR000092	Polyprenyl synthetase-like	Family
E	IPR054848	Geranylgeranyl pyrophosphate synthase CRTE-like	Family
D	IPR053378	Prenyl diphosphate synthase	Family
D	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
D	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
D	IPR000092	Polyprenyl synthetase-like	Family
D	IPR054848	Geranylgeranyl pyrophosphate synthase CRTE-like	Family
C	IPR053378	Prenyl diphosphate synthase	Family
C	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
C	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
C	IPR000092	Polyprenyl synthetase-like	Family
C	IPR054848	Geranylgeranyl pyrophosphate synthase CRTE-like	Family
B	IPR053378	Prenyl diphosphate synthase	Family
B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
B	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
B	IPR000092	Polyprenyl synthetase-like	Family
B	IPR054848	Geranylgeranyl pyrophosphate synthase CRTE-like	Family
A	IPR053378	Prenyl diphosphate synthase	Family
A	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
A	IPR000092	Polyprenyl synthetase-like	Family
A	IPR054848	Geranylgeranyl pyrophosphate synthase CRTE-like	Family