6SLJ | pdb_00006slj

Structure of the RagAB peptide transporter

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DBeta-lactamasee6sljD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Beta-lactamaseECOD (v294.1)
CBeta-lactamasee6sljC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Beta-lactamaseECOD (v294.1)
B [auth A]Beta-lactamasee6sljA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Beta-lactamaseECOD (v294.1)
A [auth B]Beta-lactamasee6sljB1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Beta-lactamaseECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, D
PF07980SusD family (SusD_RagB)SusD family- Repeat
C, D
PF14322Starch-binding associating with outer membrane (SusD-like_3)Starch-binding associating with outer membrane- Repeat
A [auth B],
B [auth A]		PF00593TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel)TonB dependent receptor-like, beta-barrelThis entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, D
Lipoprotein RagB- -
F [auth Q]ALA-SER-THR-THR-GLY-ALA-ASN-SER-GLN-ARG---
E [auth P]ALA-SER-THR-THR-GLY-ALA-ASN-SER-GLN-ARG-GLY-SER-GLY---
A [auth B],
B [auth A]		RagA protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, D
IPR012944RagB/SusD domainDomain
C, D
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C, D
IPR033985SusD-like, N-terminalDomain
A [auth B],
B [auth A]		IPR039426TonB-dependent receptor-likeFamily
A [auth B],
B [auth A]		IPR037066TonB-dependent receptor, plug domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]		IPR036942TonB-dependent receptor-like, beta-barrel domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]		IPR023997TonB-dependent outer membrane protein SusC/RagA, conserved siteConserved Site
A [auth B],
B [auth A]		IPR023996TonB-dependent outer membrane protein, SusC/RagAFamily
A [auth B],
B [auth A]		IPR000531TonB-dependent receptor-like, beta-barrelDomain
A [auth B],
B [auth A]		IPR012910TonB-dependent receptor, plug domainDomain
A [auth B],
B [auth A]		IPR008969Carboxypeptidase-like, regulatory domain superfamilyHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: BETA-BARRELPolysaccharide Utilization ProteinsRagAB peptide transporter