6SLI | pdb_00006sli

Structure of the RagAB peptide transporter

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth I]	Beta-lactamase	e6sliI1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
G [auth F]	Beta-lactamase	e6sliF1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
D [auth C]	Beta-lactamase	e6sliC1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
A	Beta-lactamase	e6sliA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
K [auth J]	Beta-lactamase	e6sliJ1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
H [auth G]	Beta-lactamase	e6sliG1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
E [auth D]	Beta-lactamase	e6sliD1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)
B	Beta-lactamase	e6sliB1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth C], G [auth F], J [auth I]	PF07980	SusD family (SusD_RagB)	SusD family	-	Repeat
A, D [auth C], G [auth F], J [auth I]	PF14322	Starch-binding associating with outer membrane (SusD-like_3)	Starch-binding associating with outer membrane	-	Repeat
B, E [auth D], H [auth G], K [auth J]	PF00593	TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel)	TonB dependent receptor-like, beta-barrel	This entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth C], G [auth F], J [auth I]	Lipoprotein RagB	-	-	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane
B, E [auth D], H [auth G], K [auth J]	RagA protein	-	-	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane
F [auth E], L [auth K]	ASTTGGNSQRGGG	-	-	-
C [auth P], I [auth H]	ALA-SER-THR-THR-GLY-GLY-ASN-SER-GLN-ARG-GLY-SER-GLY	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth C], G [auth F], J [auth I]	IPR012944	RagB/SusD domain	Domain
A, D [auth C], G [auth F], J [auth I]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, D [auth C], G [auth F], J [auth I]	IPR033985	SusD-like, N-terminal	Domain
B, E [auth D], H [auth G], K [auth J]	IPR039426	TonB-dependent receptor-like	Family
B, E [auth D], H [auth G], K [auth J]	IPR037066	TonB-dependent receptor, plug domain superfamily	Homologous Superfamily
B, E [auth D], H [auth G], K [auth J]	IPR036942	TonB-dependent receptor-like, beta-barrel domain superfamily	Homologous Superfamily
B, E [auth D], H [auth G], K [auth J]	IPR023997	TonB-dependent outer membrane protein SusC/RagA, conserved site	Conserved Site
B, E [auth D], H [auth G], K [auth J]	IPR023996	TonB-dependent outer membrane protein, SusC/RagA	Family
B, E [auth D], H [auth G], K [auth J]	IPR000531	TonB-dependent receptor-like, beta-barrel	Domain
B, E [auth D], H [auth G], K [auth J]	IPR012910	TonB-dependent receptor, plug domain	Domain
B, E [auth D], H [auth G], K [auth J]	IPR008969	Carboxypeptidase-like, regulatory domain superfamily	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, D [auth C], E [auth D], G [auth F] A, B, D [auth C], E [auth D], G [auth F], H [auth G], J [auth I], K [auth J]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, D [auth C], E [auth D], G [auth F] A, B, D [auth C], E [auth D], G [auth F], H [auth G], J [auth I], K [auth J]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, D [auth C], E [auth D], G [auth F] A, B, D [auth C], E [auth D], G [auth F], H [auth G], J [auth I], K [auth J]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Polysaccharide Utilization Proteins	RagAB peptide transporter

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.