6SHB | pdb_00006shb

Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA and AMPPnP, state 1, in the presence of ssDNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	CRISPR-associated proteins	8097728	3001554	SCOP2B (2022-06-29)
F	SCOP2 Family	RAMP-like	8097727	4004180	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	CRISPR-associated proteins	8097728	3001554	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	CRISPR-associated proteins	8097728	3001554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CRISPR-associated proteins	8097728	3001554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
KA [auth H]	Beta-lactamase	e6shbH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
Z [auth o]	Beta-lactamase	e6shbo1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
Y [auth n]	Beta-lactamase	e6shbn1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
X [auth m]	Beta-lactamase	e6shbm1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
W [auth l]	Beta-lactamase	e6shbl1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
V [auth X]	Beta-lactamase	e6shbX1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
U [auth W]	Beta-lactamase	e6shbW1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
T	Beta-lactamase	e6shbT1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
S	Beta-lactamase	e6shbS1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
R	Beta-lactamase	e6shbR1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
Q	Beta-lactamase	e6shbQ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
P	Beta-lactamase	e6shbP1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
O	Beta-lactamase	e6shbO1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
N	Beta-lactamase	e6shbN1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
MA [auth y]	Beta-lactamase	e6shby1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
M	Beta-lactamase	e6shbM1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
LA [auth Y]	Beta-lactamase	e6shbY1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
L	Beta-lactamase	e6shbL1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
JA [auth z]	Beta-lactamase	e6shbz1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
IA [auth Z]	Beta-lactamase	e6shbZ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
GA [auth x]	Beta-lactamase	e6shbx1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
FA [auth w]	Beta-lactamase	e6shbw1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
EA [auth t]	Beta-lactamase	e6shbt1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
DA [auth s]	Beta-lactamase	e6shbs1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
CA [auth r]	Beta-lactamase	e6shbr1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
BA [auth q]	Beta-lactamase	e6shbq1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
AA [auth p]	Beta-lactamase	e6shbp1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
G	Beta-lactamase	e6shbG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
F	Beta-lactamase	e6shbF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
E	Beta-lactamase	e6shbE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
D	Beta-lactamase	e6shbD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
C	Beta-lactamase	e6shbC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
B	Beta-lactamase	e6shbB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)
A	Beta-lactamase	e6shbA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.520.30	Mainly Alpha	Orthogonal Bundle	Peroxidase	domain 1	CATH (utative)
A	1.10.520.30	Mainly Alpha	Orthogonal Bundle	Peroxidase	domain 1	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
KA [auth H]	CRISPR-associated protein, Cmr3 family	-	-	-
HA [auth K]	CRISPR-associated protein, Cmr2 family	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
AA [auth p], BA [auth q], CA [auth r], DA [auth s], EA [auth t], AA [auth p], BA [auth q], CA [auth r], DA [auth s], EA [auth t], FA [auth w], GA [auth x], IA [auth Z], JA [auth z], L, LA [auth Y], M, MA [auth y], N, O, P, Q, R, S, T, U [auth W], V [auth X], W [auth l], X [auth m], Y [auth n], Z [auth o]	CRISPR-associated protein Cmrx	-	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus clearance of foreign intracellular nucleic acids response to biotic stimulus defense response to other organism response to stress CRISPR-cas system response to external biotic stimulus defense response to virus response to virus	-
K [auth V]	crRNA (49-MER)	-	-	-
J [auth U]	Cognate target RNA (43-MER)	-	-	-
I [auth J]	Cmr1,CRISPR-associated RAMP protein, Cmr1 family	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
H [auth I]	CRISPR-associated RAMP protein, Cmr6 family	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
D, E, F, G	CRISPR-associated RAMP protein, Cmr4 family	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
A, B, C	CRISPR-associated protein, Cmr5 family	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
KA [auth H]	IPR010165	Type III-B CRISPR module-associated protein Cmr3	Family
KA [auth H]	IPR052875	CRISPR-associated endoribonuclease	Family
KA [auth H]	IPR019117	CRISPR-associated protein, Cmr3	Family
HA [auth K]	IPR024615	CRISPR-associated protein Cmr2, N-terminal	Domain
HA [auth K]	IPR038242	CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster	Homologous Superfamily
HA [auth K]	IPR013407	CRISPR-associated protein Cmr2	Family
HA [auth K]	IPR054767	Cas10/Cmr2, second palm domain	Domain
HA [auth K]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
AA [auth p], BA [auth q], CA [auth r], DA [auth s], EA [auth t], AA [auth p], BA [auth q], CA [auth r], DA [auth s], EA [auth t], FA [auth w], GA [auth x], IA [auth Z], JA [auth z], L, LA [auth Y], M, MA [auth y], N, O, P, Q, R, S, T, U [auth W], V [auth X], W [auth l], X [auth m], Y [auth n], Z [auth o]	IPR053743	CRISPR system Cmr7 complex component	Homologous Superfamily
AA [auth p], BA [auth q], CA [auth r], DA [auth s], EA [auth t], AA [auth p], BA [auth q], CA [auth r], DA [auth s], EA [auth t], FA [auth w], GA [auth x], IA [auth Z], JA [auth z], L, LA [auth Y], M, MA [auth y], N, O, P, Q, R, S, T, U [auth W], V [auth X], W [auth l], X [auth m], Y [auth n], Z [auth o]	IPR043959	CRISPR system CMR subunit Cmr7 1	Family
I [auth J]	IPR007522	CRISPR-associated protein TM1795	Family
I [auth J]	IPR005537	CRISPR type III-associated protein	Domain
H [auth I]	IPR010172	CRISPR-associated protein, TM1791	Family
H [auth I]	IPR005537	CRISPR type III-associated protein	Domain
D, E, F, G	IPR013410	CRISPR-associated RAMP Cmr4	Family
D, E, F, G	IPR005537	CRISPR type III-associated protein	Domain
A, B, C	IPR010160	CRISPR-associated protein, Cmr5	Family
A, B, C	IPR023101	AF1862-like domain superfamily	Homologous Superfamily