6SGB | pdb_00006sgb

mt-SSU assemblosome of Trypanosoma brucei

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
XA [auth Fc]SCOP2 FamilyAcyl-carrier protein (ACP) 8095574 4000857 SCOP2 (2022-06-29)
XA [auth Fc]SCOP2 SuperfamilyACP-like 8095575 3001805 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth CF]e6sgbCF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF:ECOD (v294.1)
FA [auth FC]Peptidase_M13,Peptidase_M13_Ne6sgbFC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Peptidase_M13,Peptidase_M13_NECOD (v294.1)
IA [auth FM]dUTPasee6sgbFM1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: dUTPaseECOD (v294.1)
JA [auth FN]dUTPasee6sgbFN1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: dUTPaseECOD (v294.1)
LA [auth FP]Peptidase_M13,Peptidase_M13_Ne6sgbFP1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Peptidase_M13,Peptidase_M13_NECOD (v294.1)
XA [auth Fc]Peptidase_M13,Peptidase_M13_Ne6sgbFc1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Peptidase_M13,Peptidase_M13_NECOD (v294.1)
UC [auth FK]Peptidase_M13,Peptidase_M13_Ne6sgbFK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Peptidase_M13,Peptidase_M13_NECOD (v294.1)
WC [auth FV]Peptidase_M13,Peptidase_M13_Ne6sgbFV1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Peptidase_M13,Peptidase_M13_NECOD (v294.1)
GC [auth DJ]Histonee6sgbDJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: HistoneECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth CP]PF09597Small ribosomal subunit protein mS41 SAM domain (SAM_Ribosomal_mS41)Small ribosomal subunit protein mS41 SAM domainThis entry represents a SAM-like domain found in fungal mitoribosome protein mS41. The mitochondrion-specific ribosomal protein mS41 family comprises proteins that are integral components of the mitochondrial ribosome, also known as the mitoribosome ...This entry represents a SAM-like domain found in fungal mitoribosome protein mS41. The mitochondrion-specific ribosomal protein mS41 family comprises proteins that are integral components of the mitochondrial ribosome, also known as the mitoribosome. These proteins play a crucial role in the dedicated translation machinery that synthesizes mitochondrial genome-encoded proteins, which include essential transmembrane subunits of the mitochondrial respiratory chain. The mitoribosomes are tethered to the mitochondrial inner membrane, ensuring that translation products are cotranslationally integrated into the membrane. Additionally, members of the mS41 family are implicated in the regulation of telomere length, a process essential for maintaining chromosome stability and cellular lifespan. Certain members are also required for survival upon exposure to specific environmental stressors, such as the K1 killer toxin.
Domain
Z [auth F6]PF14687Domain of unknown function (DUF4460) (DUF4460)Domain of unknown function (DUF4460)- Family
EA [auth FB],
FA [auth FC]		PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]		PF02214BTB/POZ domain (BTB_2)BTB/POZ domainIn voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homo ...In voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homomultimerisation of KCTD1 and interaction of KCTD1 with the transcription factor AP-2-alpha [2-3].
Domain
RA [auth FW]PF01451Low molecular weight phosphotyrosine protein phosphatase (LMWPc)Low molecular weight phosphotyrosine protein phosphataseDomain
SA [auth FX]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
TB [auth CI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
IC [auth DT]PF00581Rhodanese-like domain (Rhodanese)Rhodanese-like domainRhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Domain
NC [auth F1]PF09243Mitochondrial small ribosomal subunit Rsm22 (Rsm22)Mitochondrial small ribosomal subunit Rsm22- Family
PC [auth FD]PF14311Probable Treble clef zinc finger domain (DUF4379)Probable Treble clef zinc finger domain- Family
QC [auth FF]PF01795MraW methylase family (Methyltransf_5)MraW methylase family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth CE]uS5m---
B [auth CF]bS6m- -
C [auth CH]uS8m---
D [auth CK]uS11m
E [auth CO]uS15m- -
F [auth CP]bS16m- -
G [auth CQ]uS17m---
H [auth CR]bS18m---
I [auth Ca]mS22- -
J [auth Cb]mS23---
K [auth Cd]mS26- -
L [auth Cj]mS34- -
M [auth Cn]mS38- -
N [auth Cp]mS41- -
O [auth DD]mS51 (KRIPP1)---
P [auth DI]mS56---
Q [auth DL]mS59---
R [auth DO]mS62 (KRIPP14)-
S [auth DP]mS63 (KRIPP16)---
T [auth DR]mS65---
U [auth DU]mS68---
V [auth DZ]mS73- -
W [auth F2]mt-SAF2 (KRIPP2)---
X [auth F3]mt-SAF3- -
Y [auth F5]mt-SAF5---
Z [auth F6]mt-SAF6- -
AA [auth F7]mt-SAF7 (KRIPP10) -
BA [auth F8]mt-SAF8---
CA [auth F9]mt-SAF9---
DA [auth FA]mt-SAF10- -
EA [auth FB],
FA [auth FC]		mt-SAF11---
HA [auth FJ]mt-SAF18---
IA [auth FM],
JA [auth FN]		mt-SAF21---
KA [auth FO]mt-SAF22 (KRIPP17)- -
LA [auth FP]mt-SAF23---
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]		mt-SAF24
RA [auth FW]mt-SAF26-
SA [auth FX]mt-SAF27 (KRIPP11)- -
TA [auth FY]mt-SAF28---
UA [auth FZ]mt-SAF29---
VA [auth Fa]mt-SAF30- -
WA [auth Fb]mt-SAF31- -
XA [auth Fc]mt-SAF32
YA [auth Fd]mt-SAF33- -
ZA [auth UA]UNK-A---
AB [auth UB],
ID [auth Uk]		UNK-B, UNK-k---
BB [auth UC]UNK-C---
DB [auth UE],
OB [auth UP]		UNK-E, UNK-P---
EB [auth UF],
KD [auth Um]		UNK-F, UNK-m---
FB [auth UG]UNK-G---
GB [auth UH]UNK-H---
HB [auth UI],
MB [auth UN]		UNK-I, UNK-N---
IB [auth UJ]UNK-J---
JB [auth UK]UNK-K---
NB [auth UO]UNK-O---
QB [auth UY]UNK-Y---
RB [auth CA]9S rRNA---
SB [auth CC]mS3m---
TB [auth CI]uS9m
UB [auth CJ]uS10m---
VB [auth CN]uS14m- -
WB [auth CS]uS19m---
XB [auth Cg]mS29 -
YB [auth Ci]mS33- -
ZB [auth Ck]mS35
AC [auth DB]mS49---
BC [auth DC]mS50---
CC [auth DE]mS52
DC [auth DF]mS53---
FC [auth DH]mS55 (KRIPP8)---
HC [auth DK]mS58---
IC [auth DT]mS67 -
JC [auth DV]mS69- -
KC [auth DW]mS70---
LC [auth DX]mS71- -
MC [auth DY]mS72- -
NC [auth F1]mt-SAF1 (RSM22)
OC [auth F4]mt-SAF4---
PC [auth FD]mt-SAF12 (KRIPP18)- -
QC [auth FF]mt-SAF14
RC [auth FG]mt-SAF15---
SC [auth FH]mt-SAF16---
TC [auth FI]mt-SAF17---
UC [auth FK]mt-SAF19- -
VC [auth FL]mt-SAF20---
WC [auth FV]mt-SAF25- -
XC [auth Fe]mt-SAF34- -
YC [auth Ua]UNK-a---
ZC [auth Ub]UNK-b---
AD [auth Uc]UNK-c---
BD [auth Ud]UNK-d---
CD [auth Ue]UNK-e---
ED [auth Ug]UNK-g---
FD [auth Uh]UNK-h---
GD [auth Ui]UNK-i---
HD [auth Uj]UNK-j---
JD [auth Ul]UNK-l---
LD [auth Ux]UNK-x---
GC [auth DJ]mS57- -
EC [auth DG]mS54---
KB [auth UL]UNK-L---
CB [auth UD],
DD [auth Uf],
LB [auth UM],
PB [auth UQ]		UNK-D, UNK-M, UNK-Q, UNK-f---
GA [auth FE]mt-SAF13---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth CF]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
D [auth CK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
E [auth CO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth Cp]IPR019083Small ribosomal subunit protein mS41, SAM domainDomain
N [auth Cp]IPR039603Small ribosomal subunit protein mS41Family
Z [auth F6]IPR028031Domain of unknown function DUF4460Domain
Z [auth F6]IPR027986T-cell activation inhibitor, mitochondrialFamily
AA [auth F7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
AA [auth F7]IPR002885Pentatricopeptide repeatRepeat
KA [auth FO]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]		IPR003131Potassium channel tetramerisation-type BTB domainDomain
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]		IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
RA [auth FW]IPR036196Phosphotyrosine protein phosphatase I superfamilyHomologous Superfamily
RA [auth FW]IPR023485Phosphotyrosine protein phosphatase IDomain
SA [auth FX]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
SA [auth FX]IPR002885Pentatricopeptide repeatRepeat
VA [auth Fa]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
XA [auth Fc]IPR006162Phosphopantetheine attachment sitePTM
XA [auth Fc]IPR009081Phosphopantetheine binding ACP domainDomain
XA [auth Fc]IPR036736ACP-like superfamilyHomologous Superfamily
XA [auth Fc]IPR003231Acyl carrier proteinFamily
YA [auth Fd]IPR025487Treble clef zinc finger domainDomain
TB [auth CI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
TB [auth CI]IPR000754Small ribosomal subunit protein uS9Family
TB [auth CI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XB [auth Cg]IPR019368Small ribosomal subunit protein mS29Family
IC [auth DT]IPR001763Rhodanese-like domainDomain
IC [auth DT]IPR036873Rhodanese-like domain superfamilyHomologous Superfamily
NC [auth F1]IPR015324Ribosomal protein Rsm22-likeFamily
NC [auth F1]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
NC [auth F1]IPR052571Mitochondrial RNA MethyltransferaseFamily
QC [auth FF]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
QC [auth FF]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
QC [auth FF]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
UC [auth FK]IPR036561Mitochondrial glycoprotein superfamilyHomologous Superfamily
UC [auth FK]IPR003428Mitochondrial glycoproteinFamily
WC [auth FV]IPR036561Mitochondrial glycoprotein superfamilyHomologous Superfamily
WC [auth FV]IPR003428Mitochondrial glycoproteinFamily