6SD1 | pdb_00006sd1

Structure of the RBM3/collar region of the Salmonella flagella MS-ring protein FliF with 33-fold symmetry applied

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	UNK_F_TYPE	e6sd1Z1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
Y	UNK_F_TYPE	e6sd1Y1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
X	UNK_F_TYPE	e6sd1X1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
W	UNK_F_TYPE	e6sd1W1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
V	UNK_F_TYPE	e6sd1V1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
U	UNK_F_TYPE	e6sd1U1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
T	UNK_F_TYPE	e6sd1T1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
S	UNK_F_TYPE	e6sd1S1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
R	UNK_F_TYPE	e6sd1R1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
Q	UNK_F_TYPE	e6sd1Q1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
P	UNK_F_TYPE	e6sd1P1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
O	UNK_F_TYPE	e6sd1O1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
N	UNK_F_TYPE	e6sd1N1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
M	UNK_F_TYPE	e6sd1M1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
L	UNK_F_TYPE	e6sd1L1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
K	UNK_F_TYPE	e6sd1K1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
J	UNK_F_TYPE	e6sd1J1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
I	UNK_F_TYPE	e6sd1I1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
H	UNK_F_TYPE	e6sd1H1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
GA [auth g]	UNK_F_TYPE	e6sd1g1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
G	UNK_F_TYPE	e6sd1G1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
FA [auth f]	UNK_F_TYPE	e6sd1f1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
F	UNK_F_TYPE	e6sd1F1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
EA [auth e]	UNK_F_TYPE	e6sd1e1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e6sd1E1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
DA [auth d]	UNK_F_TYPE	e6sd1d1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e6sd1D1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
CA [auth c]	UNK_F_TYPE	e6sd1c1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6sd1C1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
BA [auth b]	UNK_F_TYPE	e6sd1b1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6sd1B1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
AA [auth a]	UNK_F_TYPE	e6sd1a1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6sd1A1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif I in type III secretion system (From Topology)	T: Ring-building motif I in type III secretion system	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF08345	Flagellar M-ring protein C-terminal (YscJ_FliF_C)	Flagellar M-ring protein C-terminal	This is the RBM3/beta-collar domain found in bacterial flagellar M-ring (FliF) proteins [1] which also have the YscJ/FliF domain (Pfam:PF01514) at the N-terminal.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Flagellar M-ring protein	cytoskeletal motor activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection bacterial-type flagellum basal body, MS ring organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR045851	AMP-binding enzyme, C-terminal domain superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR006182	Flagellar M-ring, N-terminal	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR013556	Flagellar M-ring C-terminal	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR000067	Flagellar M-ring protein FliF	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	MS-ring of the flagellar rotor protein FliF, 33mer