6RWN | pdb_00006rwn

SIVrcm intasome in complex with dolutegravir

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
O [auth C]d6rwnc1 All alpha proteins DNA/RNA-binding 3-helical bundle Retroviral integrase, N-terminal Zn binding domain HIV/SIV integrase, N-terminal Zn binding domain Simian immunodeficiency virus (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
O [auth C]d6rwnc2 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like automated matches automated matches (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
N [auth D]d6rwnd2 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
N [auth D]d6rwnd1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Retroviral integrase, catalytic domain (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
M [auth F]d6rwnf1 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
L [auth M]d6rwnm1 All alpha proteins DNA/RNA-binding 3-helical bundle Retroviral integrase, N-terminal Zn binding domain HIV/SIV integrase, N-terminal Zn binding domain Simian immunodeficiency virus (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
L [auth M]d6rwnm2 Artifacts Tags Tags Tags N-terminal Tags (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
G [auth K]d6rwnk1 All alpha proteins DNA/RNA-binding 3-helical bundle Retroviral integrase, N-terminal Zn binding domain HIV/SIV integrase, N-terminal Zn binding domain Simian immunodeficiency virus (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
G [auth K]d6rwnk2 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like automated matches automated matches (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
F [auth L]d6rwnl2 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
F [auth L]d6rwnl1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Retroviral integrase, catalytic domain (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
E [auth N]d6rwnn1 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
D [auth E]d6rwne1 All alpha proteins DNA/RNA-binding 3-helical bundle Retroviral integrase, N-terminal Zn binding domain HIV/SIV integrase, N-terminal Zn binding domain Simian immunodeficiency virus (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)
D [auth E]d6rwne2 Artifacts Tags Tags Tags N-terminal Tags (Simian immunodeficiency virus ) [TaxId: 11723 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
P [auth B]IN_DBD_Ce6rwnB2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
P [auth B]Integrase_Zne6rwnB3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
P [auth B]rvee6rwnB1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
O [auth C]Integrase_Zne6rwnC1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
O [auth C]rvee6rwnC2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
N [auth D]IN_DBD_Ce6rwnD1 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
N [auth D]rvee6rwnD2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
M [auth F]IN_DBD_Ce6rwnF1 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
L [auth M]Integrase_Zne6rwnM1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
IIN_DBD_Ce6rwnI2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
IIntegrase_Zne6rwnI3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
Irvee6rwnI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
H [auth J]IN_DBD_Ce6rwnJ2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
H [auth J]Integrase_Zne6rwnJ1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
H [auth J]rvee6rwnJ3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
G [auth K]Integrase_Zne6rwnK2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
G [auth K]rvee6rwnK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
F [auth L]IN_DBD_Ce6rwnL2 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
F [auth L]rvee6rwnL1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
E [auth N]IN_DBD_Ce6rwnN1 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
D [auth E]Integrase_Zne6rwnE1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
AIN_DBD_Ce6rwnA3 A: beta barrelsX: SH3H: SH3T: SH3F: IN_DBD_CECOD (1.6)
AIntegrase_Zne6rwnA1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Integrase_ZnECOD (1.6)
Arvee6rwnA2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L [auth M]1.10.10.200 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Integrase, N-terminal zinc-binding domainCATH (utative)
D [auth E]1.10.10.200 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Integrase, N-terminal zinc-binding domainCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth W],
K [auth T]		DNA (5'-D(P*GP*CP*TP*AP*AP*GP*AP*AP*AP*AP*AP*TP*CP*TP*CP*TP*AP*CP*CP*A)-3')---
B [auth Q],
J [auth S]		DNA (5'-D(*AP*AP*CP*TP*GP*GP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*TP*CP*TP*TP*AP*GP*C)-3')---
Pol protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036397Ribonuclease H superfamilyHomologous Superfamily
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR001995Peptidase A2A, retrovirus, catalyticDomain
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
IPR001969Aspartic peptidase, active siteActive Site
IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
IPR018061RetropepsinsDomain
IPR017856Integrase-like, N-terminalHomologous Superfamily
IPR010661Reverse transcriptase thumbDomain
IPR002156Ribonuclease H domainDomain
IPR003308Integrase, N-terminal zinc-binding domainDomain
IPR001584Integrase, catalytic coreDomain
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR001037Integrase, C-terminal, retroviralDomain
IPR000477Reverse transcriptase domainDomain
IPR010659Reverse transcriptase connectionDomain