3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| P [auth H] | SCOP2B Superfamily | PetN subunit of the cytochrome b6f complex | 8094653 | 3000279 | SCOP2B (2022-06-29) |
| H [auth P] | SCOP2 Family | PetN subunit of the cytochrome b6f complex | 8094652 | 4001705 | SCOP2 (2022-06-29) |
| H [auth P] | SCOP2 Superfamily | PetN subunit of the cytochrome b6f complex | 8094653 | 3000279 | SCOP2 (2022-06-29) |
| L [auth D] | SCOP2B Superfamily | ISP domain | 8041548 | 3000233 | SCOP2B (2022-06-29) |
| D [auth L] | SCOP2B Superfamily | ISP domain | 8041548 | 3000233 | SCOP2B (2022-06-29) |
| J [auth B] | SCOP2 Family | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8093927 | 4002216 | SCOP2 (2022-06-29) |
| J [auth B] | SCOP2 Superfamily | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8093928 | 3000966 | SCOP2 (2022-06-29) |
| B [auth J] | SCOP2B Superfamily | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8093928 | 3000966 | SCOP2B (2022-06-29) |
| I [auth A] | SCOP2B Superfamily | Transmembrane di-heme cytochromes | 8094397 | 3000517 | SCOP2B (2022-06-29) |
| A [auth I] | SCOP2 Family | Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8094396 | 4002208 | SCOP2 (2022-06-29) |
| A [auth I] | SCOP2 Superfamily | Transmembrane di-heme cytochromes | 8094397 | 3000517 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| P [auth H] | NDK | e6rqfH1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| H [auth P] | NDK | e6rqfP1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| O [auth G] | NDK | e6rqfG1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| G [auth O] | NDK | e6rqfO1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| N [auth F] | NDK | e6rqfF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| F [auth N] | NDK | e6rqfN1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| M [auth E] | NDK | e6rqfE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| E [auth M] | NDK | e6rqfM1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| L [auth D] | NDK | e6rqfD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| D [auth L] | NDK | e6rqfL1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| C [auth K] | Sugar_tr | e6rqfK01 | A: a/b three-layered sandwiches | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Sugar_tr | ECOD (v294.1) |
| J [auth B] | NDK | e6rqfB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| B [auth J] | NDK | e6rqfJ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| I [auth A] | NDK | e6rqfA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
| A [auth I] | NDK | e6rqfI1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: NDK | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth P], P [auth H] | PF03742 | PetN (PetN) | PetN | - | Family |
| G [auth O], O [auth G] | PF02529 | Cytochrome B6-F complex subunit 5 (PetG) | Cytochrome B6-F complex subunit 5 | - | Family |
| F [auth N], N [auth F] | PF08041 | PetM family of cytochrome b6f complex subunit 7 (PetM) | PetM family of cytochrome b6f complex subunit 7 | - | Family |
| E [auth M], M [auth E] | PF05115 | Cytochrome B6-F complex subunit VI (PetL) (PetL) | Cytochrome B6-F complex subunit VI (PetL) | - | Family |
| D [auth L], L [auth D] | PF25471 | Iron-sulfur subunit PetC transmembrane anchor (TM_PetC) | Iron-sulfur subunit PetC transmembrane anchor | This transmembrane domain, consisting of a single transmembrane helix, is found in the Cytochrome b6-f complex iron-sulfur subunit PetC and related proteins. PetC, is a crucial component of the cytochrome b6f complex, which plays a central role in ox ... | Domain |
| D [auth L], L [auth D] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
| C [auth K], K [auth C] | PF16639 | Apocytochrome F, N-terminal (Apocytochr_F_N) | Apocytochrome F, N-terminal | This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain [1]. | Domain |
| C [auth K], K [auth C] | PF01333 | Apocytochrome F, C-terminal (Apocytochr_F_C) | Apocytochrome F, C-terminal | This is a sub-family of cytochrome C. See Pfam:PF00034. | Domain |
| B [auth J], J [auth B] | PF00032 | Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C) | Cytochrome b(C-terminal)/b6/petD | Domain | |
| A [auth I], I [auth A] | PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex III (bc1 and b6f) superfamily | Cytochrome bc1 and b6f complexes |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














