Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth I]SCOP2 FamilyCytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8094396 4002208 SCOP2 (2022-06-29)
A [auth I]SCOP2 SuperfamilyTransmembrane di-heme cytochromes8094397 3000517 SCOP2 (2022-06-29)
I [auth A]SCOP2B SuperfamilyTransmembrane di-heme cytochromes8094397 3000517 SCOP2B (2022-06-29)
B [auth J]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8093928 3000966 SCOP2B (2022-06-29)
J [auth B]SCOP2 Familya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8093927 4002216 SCOP2 (2022-06-29)
J [auth B]SCOP2 Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8093928 3000966 SCOP2 (2022-06-29)
L [auth D]SCOP2B SuperfamilyISP domain8041548 3000233 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyISP domain8041548 3000233 SCOP2B (2022-06-29)
H [auth P]SCOP2 FamilyPetN subunit of the cytochrome b6f complex8094652 4001705 SCOP2 (2022-06-29)
H [auth P]SCOP2 SuperfamilyPetN subunit of the cytochrome b6f complex8094653 3000279 SCOP2 (2022-06-29)
P [auth H]SCOP2B SuperfamilyPetN subunit of the cytochrome b6f complex8094653 3000279 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth I]PF00033e6rqfI1 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: PF00033ECOD (1.6)
I [auth A]PF00033e6rqfA1 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: PF00033ECOD (1.6)
B [auth J]PF00032e6rqfJ1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF00032ECOD (1.6)
J [auth B]PF00032e6rqfB1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF00032ECOD (1.6)
L [auth D]F_UNCLASSIFIEDe6rqfD2 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: F_UNCLASSIFIEDECOD (1.6)
L [auth D]PF00355e6rqfD1 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: PF00355ECOD (1.6)
L [auth D]F_UNCLASSIFIEDe6rqfD3 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: F_UNCLASSIFIEDECOD (1.6)
D [auth L]F_UNCLASSIFIEDe6rqfL3 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: F_UNCLASSIFIEDECOD (1.6)
D [auth L]PF00355e6rqfL2 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: PF00355ECOD (1.6)
D [auth L]F_UNCLASSIFIEDe6rqfL1 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: F_UNCLASSIFIEDECOD (1.6)
E [auth M]PF05115e6rqfM1 A: extended segmentsX: PetL subunit of the cytochrome b6f complex (From Topology)H: PetL subunit of the cytochrome b6f complex (From Topology)T: PetL subunit of the cytochrome b6f complexF: PF05115ECOD (1.6)
M [auth E]PF05115e6rqfE1 A: extended segmentsX: PetL subunit of the cytochrome b6f complex (From Topology)H: PetL subunit of the cytochrome b6f complex (From Topology)T: PetL subunit of the cytochrome b6f complexF: PF05115ECOD (1.6)
F [auth N]PF08041e6rqfN1 A: extended segmentsX: PetM subunit of the cytochrome b6f complex (From Topology)H: PetM subunit of the cytochrome b6f complex (From Topology)T: PetM subunit of the cytochrome b6f complexF: PF08041ECOD (1.6)
N [auth F]PF08041e6rqfF1 A: extended segmentsX: PetM subunit of the cytochrome b6f complex (From Topology)H: PetM subunit of the cytochrome b6f complex (From Topology)T: PetM subunit of the cytochrome b6f complexF: PF08041ECOD (1.6)
G [auth O]PF02529e6rqfO1 A: extended segmentsX: PetG subunit of the cytochrome b6f complex (From Topology)H: PetG subunit of the cytochrome b6f complex (From Topology)T: PetG subunit of the cytochrome b6f complexF: PF02529ECOD (1.6)
O [auth G]PF02529e6rqfG1 A: extended segmentsX: PetG subunit of the cytochrome b6f complex (From Topology)H: PetG subunit of the cytochrome b6f complex (From Topology)T: PetG subunit of the cytochrome b6f complexF: PF02529ECOD (1.6)
H [auth P]PF03742e6rqfP1 A: extended segmentsX: PetN subunit of the cytochrome b6f complex (From Topology)H: PetN subunit of the cytochrome b6f complex (From Topology)T: PetN subunit of the cytochrome b6f complexF: PF03742ECOD (1.6)
P [auth H]PF03742e6rqfH1 A: extended segmentsX: PetN subunit of the cytochrome b6f complex (From Topology)H: PetN subunit of the cytochrome b6f complex (From Topology)T: PetN subunit of the cytochrome b6f complexF: PF03742ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth I],
I [auth A]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petB- Domain
B [auth J],
J [auth B]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petD- Domain
C [auth K],
K [auth C]
PF16639Apocytochrome F, N-terminal (Apocytochr_F_N)Apocytochrome F, N-terminalThis is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain [1].Domain
C [auth K],
K [auth C]
PF01333Apocytochrome F, C-terminal (Apocytochr_F_C)Apocytochrome F, C-terminalThis is a sub-family of cytochrome C. See Pfam:PF00034.Domain
D [auth L],
L [auth D]
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
E [auth M],
M [auth E]
PF05115Cytochrome B6-F complex subunit VI (PetL) (PetL)Cytochrome B6-F complex subunit VI (PetL)- Family
F [auth N],
N [auth F]
PF08041PetM family of cytochrome b6f complex subunit 7 (PetM)PetM family of cytochrome b6f complex subunit 7- Family
G [auth O],
O [auth G]
PF02529Cytochrome B6-F complex subunit 5 (PetG)Cytochrome B6-F complex subunit 5- Family
H [auth P],
P [auth H]
PF03742PetN (PetN)PetN- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth I],
I [auth A]
Cytochrome b6
B [auth J],
J [auth B]
Cytochrome b6-f complex subunit 4
C [auth K],
K [auth C]
Cytochrome f
D [auth L],
L [auth D]
Cytochrome b6-f complex iron-sulfur subunit, chloroplastic -
E [auth M],
M [auth E]
Cytochrome b6-f complex subunit 6
F [auth N],
N [auth F]
Cytochrome b6-f complex subunit 7-
G [auth O],
O [auth G]
Cytochrome b6-f complex subunit 5
H [auth P],
P [auth H]
Cytochrome b6-f complex subunit 8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth I],
I [auth A]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
A [auth I],
I [auth A]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
A [auth I],
I [auth A]
IPR023530Cytochrome b6, PetBFamily
A [auth I],
I [auth A]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
A [auth I],
I [auth A]
IPR005797Cytochrome b/b6, N-terminal domainDomain
B [auth J],
J [auth B]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
B [auth J],
J [auth B]
IPR005798Cytochrome b/b6, C-terminalDomain
B [auth J],
J [auth B]
IPR005870Cytochrome b6/f complex, subunit IVFamily
B [auth J],
J [auth B]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C [auth K],
K [auth C]
IPR002325Cytochrome fFamily
C [auth K],
K [auth C]
IPR011054Rudiment single hybrid motifHomologous Superfamily
C [auth K],
K [auth C]
IPR036826Cytochrome f large domain superfamilyHomologous Superfamily
C [auth K],
K [auth C]
IPR024058Cytochrome f transmembrane anchorHomologous Superfamily
C [auth K],
K [auth C]
IPR024094Cytochrome f large domainDomain
D [auth L],
L [auth D]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
D [auth L],
L [auth D]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
D [auth L],
L [auth D]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
D [auth L],
L [auth D]
IPR023960Cytochrome b6-f complex iron-sulfur subunitFamily
D [auth L],
L [auth D]
IPR014349Rieske iron-sulphur proteinFamily
E [auth M],
M [auth E]
IPR007802Cytochrome b6-f complex subunit 6Family
F [auth N],
N [auth F]
IPR012595PetM of cytochrome b6/f complex subunit 7Family
G [auth O],
O [auth G]
IPR003683Cytochrome b6/f complex, subunit 5Family
G [auth O],
O [auth G]
IPR036099Cytochrome b6/f complex, subunit 5 superfamilyHomologous Superfamily
H [auth P],
P [auth H]
IPR036143Cytochrome b6-f complex, subunit 8 superfamilyHomologous Superfamily
H [auth P],
P [auth H]
IPR005497Cytochrome b6-f complex, subunit 8Family