6RHV
Crystal structure of mouse CD11b I-domain (CD11b-I) in complex with Staphylococcus aureus octameric bi-component leukocidin LukGH (LukH K319A mutant)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | d6rhvg_ | Membrane and cell surface proteins and peptides | Leukocidin-like | Leukocidin-like | automated matches | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
B [auth H] | d6rhvh_ | Membrane and cell surface proteins and peptides | Leukocidin-like | Leukocidin-like | automated matches | automated matches | (Staphylococcus aureus ) [TaxId: 1280 ], | SCOPe (2.08) |
C | d6rhvc_ | Alpha and beta proteins (a/b) | vWA-like | vWA-like | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth G] | SCOP2 Family | Leukocidin (pore-forming toxin) | 8099271 | 4003101 | SCOP2 (2022-06-29) |
A [auth G] | SCOP2 Superfamily | Leukocidin-like | 8099272 | 3000256 | SCOP2 (2022-06-29) |
B [auth H] | SCOP2 Family | Leukocidin (pore-forming toxin) | 8099269 | 4003101 | SCOP2 (2022-06-29) |
B [auth H] | SCOP2 Superfamily | Leukocidin-like | 8099270 | 3000256 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Integrin A (or I) domain | 8098285 | 4000639 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | vWA-like | 8098286 | 3000832 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | PF07968 | e6rhvG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
B [auth H] | PF07968 | e6rhvH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968 | ECOD (1.6) |
C | PF00092 | e6rhvC1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF00092 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth G] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (utative) |
B [auth H] | 2.70.240.10 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/porin MspA | CATH (utative) |
C | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G] | PF07968 | Leukocidin/Hemolysin toxin family (Leukocidin) | Leukocidin/Hemolysin toxin family | - | Domain |
B [auth H] | PF07968 | Leukocidin/Hemolysin toxin family (Leukocidin) | Leukocidin/Hemolysin toxin family | - | Domain |
PF00092 | von Willebrand factor type A domain (VWA) | von Willebrand factor type A domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Pore-forming beta-sheet toxins | Aerolysin (n=14,S=14 or n=16,S=16) |