6REU | pdb_00006reu

Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 3C, focussed refinement of F1 head and rotor


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
N [auth S]SCOP2B SuperfamilyATP synthase gamma subunit-like 8099504 3000451 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth T]ATP-synt_ab_Ne6reuT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: ATP-synt_ab_NECOD (1.6)
O [auth T]ATP-synt_ab_Ce6reuT2 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: ATP-synt_ab_CECOD (1.6)
O [auth T]ATP-synt_abe6reuT3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_abECOD (1.6)
N [auth S]ATP-synte6reuS1 A: a/b three-layered sandwichesX: ATP synthase (F1-ATPase), gamma subunit (From Topology)H: ATP synthase (F1-ATPase), gamma subunit (From Topology)T: ATP synthase (F1-ATPase), gamma subunitF: ATP-syntECOD (1.6)
L [auth Q]ATP-synt_Epse6reuQ1 A: extended segmentsX: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)H: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)T: Epsilon subunit of mitochondrial F1F0-ATP synthaseF: ATP-synt_EpsECOD (1.6)
K [auth P]OSCPe6reuP1 A: alpha bundlesX: ATPD N-terminal domain-likeH: N-terminal domain of the delta subunit of the F1F0-ATP synthase (From Topology)T: N-terminal domain of the delta subunit of the F1F0-ATP synthaseF: OSCPECOD (1.6)
JATP-synt_Ce6reuJ1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
IATP-synt_Ce6reuI1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
HATP-synt_Ce6reuH1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
GATP-synt_Ce6reuG1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
FATP-synt_Ce6reuF1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
EATP-synt_Ce6reuE1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
DATP-synt_Ce6reuD1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
CATP-synt_Ce6reuC1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
BATP-synt_Ce6reuB1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
AATP-synt_Ce6reuA1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
R [auth X],
S [auth Y],
T [auth Z]
ATP synthase subunit beta
O [auth T],
P [auth U],
Q [auth V]
ATP synthase subunit alpha -
N [auth S]ATP synthase gamma chain, mitochondrial -
M [auth R]Mitochondrial ATP synthase subunit delta -
L [auth Q]epsilon: Polytomella F-ATP synthase epsilon subunit
K [auth P]Mitochondrial ATP synthase subunit OSCP -
A, B, C, D, E
Mitochondrial ATP synthase subunit c

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
R [auth X],
S [auth Y],
T [auth Z]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
R [auth X],
S [auth Y],
T [auth Z]
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
R [auth X],
S [auth Y],
T [auth Z]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
R [auth X],
S [auth Y],
T [auth Z]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
R [auth X],
S [auth Y],
T [auth Z]
IPR050053ATPase alpha/beta chainsFamily
R [auth X],
S [auth Y],
T [auth Z]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
R [auth X],
S [auth Y],
T [auth Z]
IPR055190ATP synthase A/B type, C-terminal domainDomain
R [auth X],
S [auth Y],
T [auth Z]
IPR003593AAA+ ATPase domainDomain
R [auth X],
S [auth Y],
T [auth Z]
IPR005722ATP synthase, F1 complex, beta subunitFamily
R [auth X],
S [auth Y],
T [auth Z]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
O [auth T],
P [auth U],
Q [auth V]
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
O [auth T],
P [auth U],
Q [auth V]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
O [auth T],
P [auth U],
Q [auth V]
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
O [auth T],
P [auth U],
Q [auth V]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
O [auth T],
P [auth U],
Q [auth V]
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
O [auth T],
P [auth U],
Q [auth V]
IPR000793ATP synthase, alpha subunit, C-terminalDomain
O [auth T],
P [auth U],
Q [auth V]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
O [auth T],
P [auth U],
Q [auth V]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
O [auth T],
P [auth U],
Q [auth V]
IPR005294ATP synthase, F1 complex, alpha subunitFamily
O [auth T],
P [auth U],
Q [auth V]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth S]IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
N [auth S]IPR000131ATP synthase, F1 complex, gamma subunitFamily
N [auth S]IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
M [auth R]IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
M [auth R]IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
M [auth R]IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
L [auth Q]IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
L [auth Q]IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
K [auth P]IPR020781ATPase, OSCP/delta subunit, conserved siteConserved Site
K [auth P]IPR000711ATPase, OSCP/delta subunitFamily
K [auth P]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
A, B, C, D, E
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
A, B, C, D, E
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
A, B, C, D, E
IPR000454ATP synthase, F0 complex, subunit CFamily
A, B, C, D, E
IPR002379V-ATPase proteolipid subunit C-like domainDomain