6RDR | pdb_00006rdr

Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1D, monomer-masked refinement


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Y [auth S]SCOP2B SuperfamilyATP synthase gamma subunit-like 8099504 3000451 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Y [auth S]ATP-synte6rdrS1 A: a/b three-layered sandwichesX: ATP synthase (F1-ATPase), gamma subunit (From Topology)H: ATP synthase (F1-ATPase), gamma subunit (From Topology)T: ATP synthase (F1-ATPase), gamma subunitF: ATP-syntECOD (1.6)
W [auth Q]ATP-synt_Epse6rdrQ1 A: extended segmentsX: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)H: Epsilon subunit of mitochondrial F1F0-ATP synthase (From Topology)T: Epsilon subunit of mitochondrial F1F0-ATP synthaseF: ATP-synt_EpsECOD (1.6)
V [auth P]OSCPe6rdrP1 A: alpha bundlesX: ATPD N-terminal domain-likeH: N-terminal domain of the delta subunit of the F1F0-ATP synthase (From Topology)T: N-terminal domain of the delta subunit of the F1F0-ATP synthaseF: OSCPECOD (1.6)
T [auth J]ATP-synt_Ce6rdrJ1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
S [auth I]ATP-synt_Ce6rdrI1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
R [auth H]ATP-synt_Ce6rdrH1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
Q [auth G]ATP-synt_Ce6rdrG1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
P [auth F]ATP-synt_Ce6rdrF1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
O [auth E]ATP-synt_Ce6rdrE1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
N [auth D]ATP-synt_Ce6rdrD1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
M [auth C]ATP-synt_Ce6rdrC1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
L [auth B]ATP-synt_Ce6rdrB1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
K [auth A]ATP-synt_Ce6rdrA1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth 8]Mitochondrial ATP synthase subunit ASA8- -
H [auth 7]Mitochondrial ATP synthase associated protein ASA7- - -
G [auth 6]Mitochondrial ATP synthase subunit ASA6- - -
F [auth 5]Mitochondrial F1F0 ATP synthase associated 14 kDa protein- - -
E [auth 4]Mitochondrial ATP synthase associated protein ASA4- - -
D [auth 3]Mitochondrial F1F0 ATP synthase associated 32 kDa protein- - -
C [auth 2]ASA-2: Polytomella F-ATP synthase associated subunit 2- - -
B [auth 1]ATP synthase associated protein ASA1- -
CA [auth X],
DA [auth Y],
EA [auth Z]
ATP synthase subunit beta
AA [auth U],
BA [auth V],
Z [auth T]
ATP synthase subunit alpha -
Y [auth S]ATP synthase gamma chain, mitochondrial -
X [auth R]Mitochondrial ATP synthase subunit delta -
W [auth Q]epsilon: Polytomella F-ATP synthase epsilon subunit
V [auth P]Mitochondrial ATP synthase subunit OSCP -
U [auth M]Mitochondrial ATP synthase subunit 6 -
Mitochondrial ATP synthase subunit c
J [auth 9]ASA-9: Polytomella F-ATP synthase associated subunit 9- -
A [auth 0]ASA-10: Polytomella F-ATP synthase associated subunit 10- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth 5]IPR054538F1F0 ATP synthase subunit ASA5Family
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR050053ATPase alpha/beta chainsFamily
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR055190ATP synthase A/B type, C-terminal domainDomain
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR003593AAA+ ATPase domainDomain
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR005722ATP synthase, F1 complex, beta subunitFamily
CA [auth X],
DA [auth Y],
EA [auth Z]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth U],
BA [auth V],
Z [auth T]
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
AA [auth U],
BA [auth V],
Z [auth T]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
AA [auth U],
BA [auth V],
Z [auth T]
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
AA [auth U],
BA [auth V],
Z [auth T]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
AA [auth U],
BA [auth V],
Z [auth T]
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
AA [auth U],
BA [auth V],
Z [auth T]
IPR000793ATP synthase, alpha subunit, C-terminalDomain
AA [auth U],
BA [auth V],
Z [auth T]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
AA [auth U],
BA [auth V],
Z [auth T]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
AA [auth U],
BA [auth V],
Z [auth T]
IPR005294ATP synthase, F1 complex, alpha subunitFamily
AA [auth U],
BA [auth V],
Z [auth T]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Y [auth S]IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
Y [auth S]IPR000131ATP synthase, F1 complex, gamma subunitFamily
Y [auth S]IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
X [auth R]IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
X [auth R]IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
X [auth R]IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
W [auth Q]IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
W [auth Q]IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
V [auth P]IPR020781ATPase, OSCP/delta subunit, conserved siteConserved Site
V [auth P]IPR000711ATPase, OSCP/delta subunitFamily
V [auth P]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
U [auth M]IPR023011ATP synthase, F0 complex, subunit A, active siteActive Site
U [auth M]IPR000568ATP synthase, F0 complex, subunit AFamily
U [auth M]IPR035908ATP synthase, F0 complex, subunit A superfamilyHomologous Superfamily
U [auth M]IPR045083ATP synthase, F0 complex, subunit A, bacterial/mitochondriaFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain