Annotations: 6RDF

CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 3, monomer-masked refinement

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M [auth T]	AAA	e6rdfT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA	ECOD (v295)
K [auth M]	dUTPase	e6rdfM1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: dUTPase	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth 8]	Mitochondrial ATP synthase subunit ASA8	-	-	-
H [auth 7]	Mitochondrial ATP synthase associated protein ASA7	-	-	-
G [auth 6]	Mitochondrial ATP synthase subunit ASA6	-	-	-
F [auth 5]	Mitochondrial F1F0 ATP synthase associated 14 kDa protein	-	-	-
E [auth 4]	Mitochondrial ATP synthase associated protein ASA4	-	-	-
D [auth 3]	Mitochondrial F1F0 ATP synthase associated 32 kDa protein	-	-	-
C [auth 2]	ASA-2: Polytomella F-ATP synthase associated subunit 2	-	-	-
B [auth 1]	ATP synthase associated protein ASA1	-	-	-
M [auth T]	ATP synthase subunit alpha	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding hydrolase activity catalytic activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity ligase activity cation binding metal ion binding	-	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
L [auth P]	Mitochondrial ATP synthase subunit OSCP	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cellular anatomical structure membrane
K [auth M]	Mitochondrial ATP synthase subunit 6	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity cation binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity cation binding ion binding binding metal ion binding small molecule binding	-	respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane membrane protein complex cation channel complex transporter complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
J [auth 9]	ASA-9: Polytomella F-ATP synthase associated subunit 9	-	-	-
A [auth 0]	ASA-10: Polytomella F-ATP synthase associated subunit 10	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth 5]	IPR054538	F1F0 ATP synthase subunit ASA5	Family
M [auth T]	IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	Homologous Superfamily
M [auth T]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
M [auth T]	IPR033732	ATP synthase, F1 complex, alpha subunit nucleotide-binding domain	Domain
M [auth T]	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
M [auth T]	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
M [auth T]	IPR000793	ATP synthase, alpha subunit, C-terminal	Domain
M [auth T]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
M [auth T]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
M [auth T]	IPR005294	ATP synthase, F1 complex, alpha subunit	Family
M [auth T]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
L [auth P]	IPR020781	ATPase, OSCP/delta subunit, conserved site	Conserved Site
L [auth P]	IPR000711	ATPase, OSCP/delta subunit	Family
L [auth P]	IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	Homologous Superfamily
K [auth M]	IPR023011	ATP synthase, F0 complex, subunit A, active site	Active Site
K [auth M]	IPR000568	ATP synthase, F0 complex, subunit A	Family
K [auth M]	IPR035908	ATP synthase, F0 complex, subunit A superfamily	Homologous Superfamily
K [auth M]	IPR045083	ATP synthase, F0 complex, subunit A, bacterial/mitochondria	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth 0], I [auth 8], J [auth 9], K [auth M], L [auth P] A [auth 0], I [auth 8], J [auth 9], K [auth M], L [auth P], M [auth T]	PDBTM	Annotated as membrane protein by PDBTM

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6RDF | pdb_00006rdf

CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 3, monomer-masked refinement

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage